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OQ625504.1__WHL30656.1__CrLKS4_g90__00090

Bact-Vir

OQ625504.1__WHL30656.1__CrLKS4_g90__00090

Identity

Accession:
OQ625504 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cylindrospermopsis_phage_Cr-LKS4

TaxID: 3046275

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-115
PDB
Domain cluster: rep: MT006234.1__QIG78055.1__BRUR0010001c01_00024__00024__D3-152
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04404.18 best ERF 40.5 3.80e-10 97.4% 76.5%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.59 45.0 4.01e-01 80.9% 98.2%
7v6bA01 3.30.160.380 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain 0.55 43.0 4.40e-01 84.3% 88.6%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.22e-01 95.7% 77.0%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.53 32.0 3.85e-01 95.7% 91.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 24.0 3.20e-01 95.7% 83.9%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.51 42.0 3.50e-01 88.7% 88.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039841 330.1.1.36 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › ERF 0.86 78.0 8.03e-01 96.5% 99.1%
3512065 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 39.0 4.92e-01 97.4% 93.8%
3924597 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.61 32.0 3.97e-01 93.0% 81.4%
3237475 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 32.0 3.73e-01 88.7% 71.8%
3430377 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 43.0 4.79e-01 81.7% 96.7%
3574409 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 32.0 3.53e-01 89.6% 64.4%
4103142 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 32.0 3.77e-01 88.7% 77.5%
4036688 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.54 45.0 4.01e-01 90.4% 90.3%
3364063 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.53 40.0 3.77e-01 100.0% 65.0%
4303869 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.53 39.0 4.31e-01 89.6% 96.7%
3340171 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 36.0 4.18e-01 91.3% 100.0%
3969907 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.53 41.0 3.22e-01 84.3% 87.7%
3987859 101.1.2.584 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA 0.52 34.0 3.53e-01 99.1% 69.1%
3973805 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.52 38.0 2.80e-01 76.5% 60.3%
4019913 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 38.0 3.94e-01 78.3% 94.4%
4036940 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.50 38.0 4.14e-01 93.9% 96.8%
4031599 101.1.2.584 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA 0.50 39.0 4.22e-01 91.3% 97.9%
5069135 7504.1.1.2 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.50 43.0 3.68e-01 93.0% 91.4%
D2 high residues 135-188
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x0pE02 1.10.287.1540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 45.0 4.80e-01 87.0% 91.1%
8d8lM01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 53.0 4.69e-01 98.1% 76.5%
3gzfD00 1.10.150.420 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus 0.63 36.0 2.99e-01 79.6% 34.1%
7zhgO01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 53.0 5.02e-01 100.0% 93.9%
4yerA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 49.0 3.45e-01 100.0% 29.2%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 42.0 3.97e-01 74.1% 88.2%
4jxjA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.57 46.0 4.43e-01 94.4% 83.1%
3futA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.57 47.0 4.51e-01 96.3% 89.2%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 47.0 3.66e-01 100.0% 44.8%
1k3xA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 46.0 3.64e-01 100.0% 44.9%
1chkA02 3.30.386.10 Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 0.56 44.0 3.88e-01 98.1% 92.6%
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 45.0 3.66e-01 100.0% 48.8%
3tacB02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 48.0 4.27e-01 100.0% 96.2%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 45.0 3.85e-01 98.1% 84.7%
3ftdA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.55 45.0 4.34e-01 98.1% 82.5%
3v76A03 1.10.8.260 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like 0.54 45.0 4.38e-01 96.3% 93.4%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.53 34.0 3.06e-01 74.1% 42.0%
2zg6A02 1.10.150.660 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 44.0 4.04e-01 96.3% 72.2%
1qsaA02 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.50 32.0 3.07e-01 70.4% 50.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3293670 3525.1.1.1 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.63 54.0 4.80e-01 100.0% 78.8%
4298450 102.2.1.1 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › RrnaAD 0.62 52.0 4.87e-01 100.0% 82.9%
5054184 3273.1.1.0 ↗ alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins 0.60 41.0 3.32e-01 75.9% 35.5%
None — 0.60 48.0 2.79e-01 100.0% 9.0%
5012527 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.60 43.0 2.89e-01 77.8% 48.2%
3988204 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.59 49.0 3.61e-01 100.0% 34.4%
5053405 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.58 44.0 2.86e-01 100.0% 18.0%
3165359 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.58 39.0 3.32e-01 72.2% 63.0%
3465242 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.57 47.0 3.27e-01 100.0% 29.3%
4983854 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.57 46.0 3.05e-01 100.0% 22.9%
3803972 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.56 37.0 3.48e-01 98.1% 51.4%
3590714 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.56 45.0 3.15e-01 100.0% 28.6%
5032859 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.55 46.0 4.31e-01 100.0% 77.1%
5040523 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.52 42.0 4.01e-01 94.4% 87.7%
3595474 559.1.1.0 ↗ alpha duplicates or obligate multimers › H-NS histone-like proteins, N-terminal domain › H-NS histone-like proteins, N-terminal domain › H-NS histone-like proteins, N-terminal domain 0.51 37.0 2.96e-01 79.6% 47.8%
3195421 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.50 32.0 2.87e-01 100.0% 41.7%