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OQ627802.1__WFF43731.1__X__00001

Bact-Vir

OQ627802.1__WFF43731.1__X__00001

Identity

Accession:
OQ627802 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 148-288
PDB
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bdwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 38.0 4.07e-01 98.6% 78.9%
1bmlC03 3.10.20.150 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 22.0 2.85e-01 98.6% 65.1%
5df7A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 44.0 3.36e-01 94.3% 74.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 23.0 3.45e-01 97.2% 100.0%
3980075 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.52 37.0 2.97e-01 72.3% 64.6%
D2 medium residues 6-42
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5oomK00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.80 59.0 3.73e-01 81.1% 40.1%
1vw4H00 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.76 55.0 3.71e-01 81.1% 48.0%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.70 49.0 2.84e-01 78.4% 8.0%
2zxiA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.68 47.0 3.54e-01 73.0% 27.8%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.68 46.0 4.17e-01 73.0% 92.7%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 45.0 3.05e-01 73.0% 39.3%
1jeyA03 4.10.970.10 Few Secondary Structures › Irregular › Ku70, bridge and pillars › Ku70, bridge and pillars 0.66 50.0 4.26e-01 86.5% 60.3%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 45.0 2.73e-01 78.4% 10.2%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 44.0 3.34e-01 78.4% 27.4%
1y2mD01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.63 52.0 3.31e-01 100.0% 42.7%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 51.0 3.24e-01 100.0% 88.0%
3o8lA03 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 50.0 3.22e-01 100.0% 88.4%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.62 47.0 4.15e-01 83.8% 71.4%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 3.38e-01 81.1% 30.1%
4jp0A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 46.0 3.26e-01 89.2% 75.4%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.61 45.0 3.00e-01 83.8% 36.0%
4xotA01 6.10.20.90 Special › Helix non-globular › Arc Repressor Mutant, subunit A › Hk620 tailspike protein, N-terminal domain-like 0.61 42.0 3.44e-01 73.0% 34.6%
4izeA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 47.0 3.26e-01 94.6% 78.9%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.59 41.0 2.30e-01 75.7% 6.9%
2h4oA00 6.20.120.10 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.55e-01 81.1% 43.5%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 40.0 3.09e-01 86.5% 30.3%
3v7iA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 39.0 2.75e-01 83.8% 46.9%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 37.0 2.94e-01 81.1% 28.7%
1s7iA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.54 38.0 2.79e-01 78.4% 23.4%
1ce7A02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.54 37.0 3.25e-01 83.8% 48.1%
3tndB01 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.54 39.0 3.83e-01 78.4% 82.9%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 45.0 3.75e-01 97.3% 69.0%
2y9wC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 3.01e-01 91.9% 45.6%
3oo2A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.54 39.0 2.76e-01 86.5% 90.0%
1jeyB02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.54 44.0 2.76e-01 94.6% 19.4%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.53 45.0 3.73e-01 100.0% 69.0%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 2.46e-01 83.8% 72.5%
1i77A00 3.90.10.10 Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 0.52 37.0 2.79e-01 81.1% 29.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228583 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 52.0 3.72e-01 78.4% 24.3%
3629246 60.1.2.2 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.74 51.0 2.97e-01 75.7% 8.7%
3594965 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.73 52.0 3.49e-01 78.4% 20.0%
3590012 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.70 55.0 3.34e-01 91.9% 46.4%
3440933 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.68 52.0 3.64e-01 83.8% 72.8%
3828336 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 47.0 3.41e-01 81.1% 24.6%
4015021 221.1.3.0 a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.67 49.0 2.96e-01 86.5% 11.1%
4271212 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 47.0 3.33e-01 81.1% 22.8%
3406351 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 47.0 3.46e-01 78.4% 26.4%
3871159 60.1.2.2 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.67 50.0 2.97e-01 83.8% 13.0%
3586018 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 46.0 3.19e-01 78.4% 20.0%
3690513 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 46.0 3.23e-01 81.1% 21.1%
5003454 1075.3.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.66 45.0 2.72e-01 73.0% 10.0%
5035493 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 46.0 3.38e-01 81.1% 26.7%
4162129 60.1.2.2 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.65 48.0 2.87e-01 83.8% 12.8%
3717403 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.65 44.0 2.61e-01 75.7% 8.3%
3442824 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.65 48.0 2.89e-01 81.1% 58.6%
3265214 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 45.0 3.26e-01 81.1% 24.3%
3786162 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 47.0 3.58e-01 81.1% 32.6%
1000517 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 44.0 3.38e-01 78.4% 28.7%
3937387 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.63 44.0 3.18e-01 78.4% 23.3%
3202986 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 43.0 3.14e-01 78.4% 22.4%
3359387 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.62 42.0 2.41e-01 73.0% 6.2%
4662222 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 44.0 3.21e-01 83.8% 25.0%
3234976 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 43.0 3.16e-01 81.1% 25.5%
3675304 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 43.0 3.09e-01 81.1% 23.3%
4181293 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 43.0 3.19e-01 78.4% 25.5%
3781291 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 42.0 3.26e-01 78.4% 31.0%
3485296 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 42.0 3.14e-01 81.1% 26.7%
4381440 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 41.0 3.06e-01 78.4% 24.3%
5078448 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 42.0 3.19e-01 81.1% 28.2%
3952733 5.1.8.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › Peptidase_S9_N 0.58 40.0 2.50e-01 70.3% 10.7%
3298201 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 41.0 3.53e-01 78.4% 41.4%
4084910 304.4.1.3 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.58 41.0 3.01e-01 78.4% 24.2%
4928315 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 40.0 3.35e-01 81.1% 38.7%
3582376 2003.1.2.34 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Prenylcys_lyase 0.56 43.0 2.59e-01 81.1% 50.2%
60305 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 40.0 3.11e-01 86.5% 31.1%
3628456 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 39.0 2.85e-01 81.1% 24.2%
3488042 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 40.0 2.36e-01 83.8% 10.4%
4517656 109.4.1.526 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.56 40.0 2.48e-01 94.6% 11.6%
3789462 5069.1.1.4 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct 0.56 38.0 2.38e-01 75.7% 10.9%
3653673 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.55 40.0 2.49e-01 81.1% 53.9%
4499359 4139.1.1.0 a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like 0.54 41.0 3.54e-01 94.6% 67.1%
3724558 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.53 36.0 2.96e-01 81.1% 31.8%
4224821 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 36.0 2.78e-01 81.1% 27.8%
3682974 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.51 35.0 2.22e-01 70.3% 9.9%
3622893 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 38.0 2.31e-01 97.3% 25.4%
D3 medium residues 47-116
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 37.0 4.48e-01 78.6% 79.5%
4maaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 42.0 3.29e-01 91.4% 32.4%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.56 43.0 4.51e-01 88.6% 93.5%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 38.0 3.53e-01 88.6% 53.7%
1rjaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 40.0 3.62e-01 90.0% 55.0%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 41.0 3.71e-01 88.6% 57.8%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.54 42.0 3.81e-01 87.1% 87.3%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 40.0 3.54e-01 88.6% 52.8%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 37.0 3.45e-01 88.6% 53.5%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 37.0 3.38e-01 90.0% 54.0%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 35.0 2.96e-01 80.0% 42.3%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.50 40.0 3.37e-01 95.7% 77.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015989 239.1.1.7 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.67 38.0 4.19e-01 78.6% 69.1%
4935406 1.1.7.139 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HcyBio 0.58 46.0 3.36e-01 85.7% 53.4%
4233290 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.57 37.0 4.21e-01 87.1% 94.0%
3854670 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 39.0 3.19e-01 88.6% 36.4%
3480379 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 42.0 3.83e-01 90.0% 57.1%
3502375 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.56 35.0 4.16e-01 100.0% 100.0%
4383764 270.1.1.2 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.55 43.0 3.74e-01 85.7% 78.2%
2560565 6041.1.1.0 a+b two layers › DUF1107-like › DUF1107-like › DUF1107-like 0.55 44.0 3.84e-01 88.6% 63.0%
3233501 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 39.0 3.39e-01 88.6% 47.0%
3483784 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 37.0 3.36e-01 90.0% 50.5%
3232331 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.53 40.0 2.88e-01 87.1% 73.1%
4448182 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 28.0 2.92e-01 95.7% 50.8%
4012079 149.1.1.0 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.52 41.0 2.51e-01 88.6% 69.0%
3195503 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 40.0 2.49e-01 90.0% 28.0%
4065495 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.50 39.0 3.53e-01 87.1% 95.0%
4257915 5104.1.1.4 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 0.50 40.0 3.33e-01 91.4% 65.2%