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OQ627802.1__WFF43747.1__X__00016

Bact-Vir

OQ627802.1__WFF43747.1__X__00016

Identity

Accession:
OQ627802 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_CR28

TaxID: 3035945

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-93
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 62.0 4.86e-01 100.0% 43.7%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 60.0 4.88e-01 100.0% 48.7%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 42.0 4.00e-01 82.0% 53.9%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 55.0 5.29e-01 100.0% 84.3%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.79e-01 82.0% 54.0%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.84e-01 93.4% 50.5%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.39e-01 93.4% 39.3%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.49e-01 93.4% 46.3%
2mysA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 43.0 3.56e-01 98.4% 52.8%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.69e-01 93.4% 57.1%
1sknP00 1.10.880.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain 0.53 30.0 2.87e-01 72.1% 45.9%
2rsiA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 27.0 3.40e-01 95.1% 93.1%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.89e-01 98.4% 70.0%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 41.0 4.07e-01 100.0% 88.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963517 101.1.9.44 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PyocinActivator 0.67 57.0 5.32e-01 98.4% 76.2%
5063691 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.64 46.0 4.08e-01 83.6% 54.1%
4940863 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 42.0 3.88e-01 82.0% 51.8%
4964920 101.1.2.944 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26486 0.61 42.0 4.28e-01 77.0% 73.3%
3958566 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.59 44.0 3.96e-01 83.6% 56.7%
3249215 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 47.0 4.24e-01 93.4% 82.2%
4966804 101.1.2.530 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.56 45.0 4.13e-01 93.4% 65.9%
4464087 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.56 42.0 3.86e-01 82.0% 62.5%
4968989 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 3.73e-01 82.0% 57.6%
5005155 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.78e-01 93.4% 54.5%
3285369 109.4.1.2998 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25872 0.55 44.0 2.66e-01 93.4% 12.7%
3952617 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.54 42.0 3.76e-01 93.4% 61.0%
4991239 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 44.0 3.88e-01 93.4% 60.0%
4965712 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.54 46.0 4.02e-01 98.4% 66.3%
4976901 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.80e-01 95.1% 62.2%
5076781 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.41e-01 93.4% 46.9%
3534412 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 27.0 3.50e-01 98.4% 96.7%
4015761 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 3.89e-01 98.4% 64.2%
3282605 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.52 42.0 3.92e-01 93.4% 71.2%
4183916 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.52 43.0 3.05e-01 98.4% 88.8%
3400082 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.52 41.0 3.58e-01 93.4% 55.0%
3223457 101.1.2.661 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.52 40.0 2.67e-01 88.5% 20.7%
3669754 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.30e-01 96.7% 46.4%
4028993 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.51 35.0 2.99e-01 75.4% 73.9%