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OQ627802.1__WFF43751.1__X__00020
Bact-VirOQ627802.1__WFF43751.1__X__00020
Identity
- Accession:
- OQ627802 ↗
- Kingdom:
- phage
Quality
90.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-78
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fhnA01 | 6.10.280.210 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A | 0.82 | 54.0 | 3.93e-01 | 81.6% | 27.7% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.75 | 59.0 | 6.11e-01 | 84.2% | 88.7% |
| 6lumG01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.73 | 54.0 | 4.70e-01 | 77.6% | 57.1% |
| 2pg0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 53.0 | 4.17e-01 | 81.6% | 39.6% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.71 | 38.0 | 4.10e-01 | 76.3% | 62.5% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 55.0 | 4.95e-01 | 82.9% | 67.0% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 51.0 | 5.13e-01 | 90.8% | 75.3% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 44.0 | 4.35e-01 | 84.2% | 61.7% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 46.0 | 4.21e-01 | 77.6% | 54.9% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.66 | 53.0 | 4.56e-01 | 100.0% | 55.6% |
| 3fb2A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 46.0 | 4.14e-01 | 77.6% | 53.3% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 48.0 | 4.35e-01 | 78.9% | 57.8% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 32.0 | 3.74e-01 | 82.9% | 64.2% |
| 2xzmV01 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.65 | 34.0 | 3.75e-01 | 85.5% | 62.3% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.65 | 58.0 | 3.91e-01 | 96.1% | 83.2% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 58.0 | 4.19e-01 | 100.0% | 81.0% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 45.0 | 4.53e-01 | 86.8% | 72.2% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 36.0 | 3.55e-01 | 92.1% | 49.4% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.64 | 50.0 | 4.97e-01 | 85.5% | 78.8% |
| 3ezhA00 | 1.20.120.960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain | 0.64 | 54.0 | 4.68e-01 | 92.1% | 99.1% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.63 | 55.0 | 3.68e-01 | 100.0% | 46.3% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 38.0 | 2.96e-01 | 89.5% | 29.7% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 40.0 | 3.44e-01 | 76.3% | 43.9% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.62 | 43.0 | 4.06e-01 | 78.9% | 60.7% |
| 1zvuA03 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.61 | 47.0 | 3.82e-01 | 81.6% | 63.6% |
| 7l4aA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 45.0 | 3.25e-01 | 78.9% | 54.3% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 35.0 | 4.18e-01 | 82.9% | 86.3% |
| 2a9uA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 45.0 | 3.87e-01 | 81.6% | 49.2% |
| 2uxwA01 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 52.0 | 3.85e-01 | 94.7% | 45.7% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.59 | 41.0 | 4.55e-01 | 72.4% | 100.0% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 41.0 | 3.77e-01 | 77.6% | 54.5% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.59 | 36.0 | 3.67e-01 | 96.1% | 61.0% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.58 | 32.0 | 3.45e-01 | 100.0% | 60.3% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 46.0 | 4.59e-01 | 86.8% | 83.7% |
| 2kfdA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.57 | 35.0 | 3.79e-01 | 72.4% | 72.3% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.56 | 41.0 | 4.14e-01 | 77.6% | 83.5% |
| 6xm1A02 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.56 | 46.0 | 4.10e-01 | 93.4% | 84.1% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.55 | 34.0 | 3.92e-01 | 76.3% | 85.5% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 34.0 | 2.99e-01 | 85.5% | 42.1% |
| 1ihuA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 44.0 | 3.16e-01 | 92.1% | 28.6% |
| 1z21A00 | 1.10.10.1000 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain | 0.54 | 31.0 | 2.92e-01 | 84.2% | 42.7% |
| 2lpbA00 | 1.10.287.2920 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 46.0 | 4.51e-01 | 94.7% | 91.4% |
| 7kypE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.80e-01 | 76.3% | 74.7% |
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.52 | 40.0 | 3.10e-01 | 96.1% | 33.8% |
| 3vouB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 43.0 | 3.69e-01 | 100.0% | 73.5% |
| 1ecaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 41.0 | 3.41e-01 | 89.5% | 49.3% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3825757 | 101.35.1.23 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate | 0.74 | 39.0 | 4.25e-01 | 100.0% | 61.5% |
| 4468389 | 5086.1.1.101 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › SH3BP5 | 0.73 | 53.0 | 4.52e-01 | 86.8% | 48.3% |
| 3323413 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.72 | 59.0 | 5.68e-01 | 86.8% | 90.6% |
| 5042923 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.71 | 60.0 | 5.14e-01 | 90.8% | 100.0% |
| 3313375 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.71 | 58.0 | 5.01e-01 | 88.2% | 67.8% |
| 3419147 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.71 | 57.0 | 5.39e-01 | 86.8% | 85.6% |
| 3837701 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.70 | 39.0 | 4.20e-01 | 100.0% | 64.6% |
| 3169408 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.69 | 39.0 | 4.12e-01 | 100.0% | 61.4% |
| 3688401 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.69 | 53.0 | 3.54e-01 | 81.6% | 22.1% |
| 3538509 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.68 | 57.0 | 5.07e-01 | 90.8% | 76.2% |
| 2774528 | 3286.1.1.1 ↗ | alpha complex topology › Glypican insertion domain › Glypican insertion domain › Glypican insertion domain › Glypican | 0.67 | 54.0 | 4.34e-01 | 86.8% | 54.1% |
| 3522050 | 109.3.1.131 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › INT_SG_DDX_CT_C | 0.67 | 31.0 | 3.19e-01 | 84.2% | 45.9% |
| 3798353 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.67 | 52.0 | 4.10e-01 | 86.8% | 41.3% |
| 3973966 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.66 | 49.0 | 4.40e-01 | 96.1% | 58.0% |
| 3505438 | 604.1.1.67 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_5 | 0.66 | 47.0 | 4.27e-01 | 77.6% | 56.0% |
| 3698292 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.66 | 51.0 | 4.14e-01 | 82.9% | 45.5% |
| 3506153 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.66 | 51.0 | 4.94e-01 | 81.6% | 86.7% |
| 3885014 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 50.0 | 4.29e-01 | 81.6% | 54.2% |
| 3876213 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.65 | 51.0 | 4.59e-01 | 86.8% | 70.9% |
| 3171915 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.65 | 47.0 | 4.55e-01 | 75.0% | 80.0% |
| 3834278 | 4133.1.1.1 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT | 0.65 | 36.0 | 3.93e-01 | 98.7% | 64.6% |
| 1068636 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.65 | 32.0 | 3.74e-01 | 82.9% | 64.2% |
| 5044061 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.65 | 52.0 | 3.84e-01 | 84.2% | 50.6% |
| 4570654 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.65 | 56.0 | 4.17e-01 | 94.7% | 39.5% |
| 3238821 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.64 | 55.0 | 5.35e-01 | 94.7% | 94.1% |
| 4028482 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.64 | 55.0 | 4.45e-01 | 92.1% | 50.0% |
| 3181139 | 611.9.1.0 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain | 0.64 | 54.0 | 4.31e-01 | 93.4% | 76.8% |
| 3661547 | 109.3.1.182 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Rx_N | 0.63 | 51.0 | 4.14e-01 | 89.5% | 76.6% |
| 3189247 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.62 | 53.0 | 3.73e-01 | 92.1% | 82.1% |
| 4002097 | 109.4.1.908 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOP1 | 0.62 | 49.0 | 3.22e-01 | 84.2% | 22.2% |
| 4382041 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.62 | 35.0 | 3.71e-01 | 100.0% | 63.1% |
| 3547935 | 3204.1.1.0 ↗ | extended segments › N-terminal regulatory segment of carnitine palmitoyltransferase 1A › N-terminal regulatory segment of carnitine palmitoyltransferase 1A › N-terminal regulatory segment of carnitine palmitoyltransferase 1A | 0.62 | 55.0 | 4.88e-01 | 100.0% | 75.5% |
| 3398172 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.62 | 51.0 | 4.64e-01 | 92.1% | 81.0% |
| 3249343 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.62 | 48.0 | 3.50e-01 | 86.8% | 33.3% |
| 5081366 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.59 | 53.0 | 4.07e-01 | 97.4% | 70.9% |
| 4995693 | 4230.1.1.0 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain | 0.59 | 35.0 | 3.59e-01 | 78.9% | 60.0% |
| 3930036 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.58 | 32.0 | 3.48e-01 | 80.3% | 63.1% |
| 4937924 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.58 | 41.0 | 4.11e-01 | 75.0% | 83.7% |
| 3331556 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.57 | 47.0 | 4.39e-01 | 92.1% | 77.9% |
| 3841673 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.57 | 42.0 | 3.86e-01 | 84.2% | 59.0% |
| 3614305 | 206.1.1.71 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo | 0.57 | 49.0 | 3.01e-01 | 92.1% | 70.5% |
| 4564044 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.57 | 45.0 | 3.21e-01 | 90.8% | 28.1% |
| 3940812 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.56 | 43.0 | 3.81e-01 | 81.6% | 61.8% |
| 4940088 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.56 | 45.0 | 4.09e-01 | 93.4% | 63.8% |
| 4939128 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.55 | 36.0 | 3.82e-01 | 84.2% | 74.3% |