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OQ627806.1__WFD53067.1__X__00039

Bact-Vir

OQ627806.1__WFD53067.1__X__00039

Identity

Accession:
OQ627806 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_S16

TaxID: 3035948

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-93
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 60.0 6.96e-01 73.5% 100.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 62.0 6.74e-01 77.1% 90.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 62.0 6.82e-01 75.9% 100.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 61.0 6.85e-01 85.5% 95.5%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 55.0 6.49e-01 71.1% 100.0%
2mk5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 64.0 5.45e-01 83.1% 74.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 51.0 6.06e-01 77.1% 96.5%
1xovA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 58.0 6.37e-01 78.3% 98.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 54.0 5.94e-01 75.9% 89.7%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 65.0 6.09e-01 94.0% 100.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 45.0 5.51e-01 78.3% 100.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 49.0 5.57e-01 78.3% 90.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 48.0 5.62e-01 77.1% 96.6%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 5.32e-01 88.0% 100.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 51.0 5.65e-01 81.9% 92.4%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 5.45e-01 88.0% 96.5%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 51.0 4.44e-01 79.5% 51.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 41.0 5.15e-01 72.3% 100.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 42.0 5.12e-01 85.5% 96.1%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 53.0 5.53e-01 85.5% 89.2%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 4.77e-01 84.3% 76.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 48.0 5.51e-01 78.3% 100.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 46.0 4.75e-01 78.3% 73.4%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 47.0 5.17e-01 77.1% 89.6%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 50.0 5.13e-01 89.2% 81.5%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 39.0 3.85e-01 79.5% 55.6%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.13e-01 79.5% 88.0%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 42.0 4.87e-01 88.0% 98.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 37.0 4.44e-01 77.1% 90.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 45.0 4.89e-01 100.0% 97.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.60 46.0 4.40e-01 100.0% 71.6%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.60 37.0 4.35e-01 75.9% 100.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.58e-01 94.0% 92.3%
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.58 40.0 4.52e-01 83.1% 98.3%
2fmyA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 44.0 3.72e-01 100.0% 49.3%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.90e-01 96.4% 89.5%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.57 49.0 4.42e-01 98.8% 80.3%
1ft9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 41.0 3.60e-01 100.0% 51.1%
4nplA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.55 47.0 3.59e-01 100.0% 77.5%
2fbeA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 45.0 3.58e-01 100.0% 91.0%
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.52 35.0 3.74e-01 79.5% 83.8%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.78e-01 100.0% 87.4%
5yhoA02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.52 45.0 4.01e-01 100.0% 86.2%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.52 46.0 3.41e-01 100.0% 68.6%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 43.0 3.83e-01 100.0% 72.0%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 45.0 4.01e-01 98.8% 87.5%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 4.19e-01 97.6% 89.5%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.89 62.0 7.28e-01 73.5% 100.0%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.88 63.0 6.86e-01 74.7% 87.1%
4602101 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.88 64.0 7.24e-01 78.3% 96.9%
4550532 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.88 66.0 6.43e-01 78.3% 72.2%
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.87 65.0 7.09e-01 78.3% 91.4%
137947 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.87 65.0 7.16e-01 77.1% 95.5%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.87 61.0 6.85e-01 78.3% 92.3%
4032300 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.87 67.0 6.56e-01 80.7% 91.1%
137916 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.86 61.0 6.84e-01 74.7% 93.8%
1263586 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 62.0 6.69e-01 77.1% 87.5%
1905739 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.85 67.0 6.70e-01 83.1% 97.7%
4127826 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.85 64.0 7.22e-01 79.5% 100.0%
1263580 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.85 62.0 6.54e-01 77.1% 84.0%
3988893 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.85 64.0 6.74e-01 78.3% 89.3%
4031670 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.85 59.0 6.85e-01 72.3% 98.3%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.85 63.0 6.84e-01 77.1% 98.6%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 61.0 6.66e-01 77.1% 88.6%
3700747 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 67.0 6.47e-01 81.9% 94.4%
4038705 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 62.0 6.93e-01 75.9% 96.9%
4009391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 62.0 6.35e-01 77.1% 82.5%
3969959 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 65.0 6.36e-01 81.9% 82.2%
4386715 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 65.0 6.44e-01 81.9% 95.3%
5063004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 58.0 6.54e-01 75.9% 93.8%
4084890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 58.0 6.53e-01 73.5% 100.0%
2410170 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 59.0 6.67e-01 77.1% 98.4%
3978088 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 60.0 6.67e-01 79.5% 96.9%
3165077 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.81 58.0 6.27e-01 73.5% 87.1%
4650162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 6.72e-01 80.7% 100.0%
3715828 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.81 61.0 6.22e-01 78.3% 93.8%
3385856 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.81 59.0 6.69e-01 78.3% 100.0%
3989970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 58.0 6.53e-01 77.1% 95.4%
4358722 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 64.0 5.84e-01 90.4% 65.7%
4091533 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 61.0 6.57e-01 79.5% 97.1%
4427420 4.1.1.436 ↗ beta barrels › SH3 › SH3 › SH3 › PF29249 0.80 62.0 6.36e-01 86.7% 83.7%
1673571 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.79 63.0 6.63e-01 84.3% 93.4%
2410169 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 5.96e-01 79.5% 81.9%
1545880 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.76 54.0 5.57e-01 77.1% 77.5%
4091791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 61.0 6.41e-01 86.7% 93.3%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 51.0 5.76e-01 81.9% 90.8%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 53.0 5.98e-01 88.0% 95.4%
3909202 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 53.0 5.75e-01 81.9% 88.6%
3594081 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.60e-01 78.3% 93.8%
4474739 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.27e-01 78.3% 77.3%
2725406 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 50.0 5.07e-01 78.3% 70.7%
3479037 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.18e-01 79.5% 73.8%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 56.0 6.01e-01 100.0% 95.7%
158943 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 49.0 5.09e-01 78.3% 73.4%
3651961 4.1.1.251 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 0.73 45.0 5.35e-01 100.0% 94.5%
3721794 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 43.0 4.94e-01 78.3% 81.7%
3224441 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 5.37e-01 79.5% 85.3%
4020558 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 50.0 5.56e-01 79.5% 90.8%
1108894 4.1.1.122 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_17 0.72 46.0 5.54e-01 94.0% 100.0%
3897333 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 53.0 5.39e-01 81.9% 78.8%
3692073 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 49.0 5.35e-01 79.5% 84.3%
3934527 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 47.0 5.57e-01 74.7% 100.0%
3396896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 59.0 6.16e-01 86.7% 100.0%
4347828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.73e-01 77.1% 91.4%
3740753 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.71 43.0 4.81e-01 96.4% 78.5%
3660923 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 43.0 4.66e-01 100.0% 72.9%
4033023 4.1.1.454 ↗ beta barrels › SH3 › SH3 › SH3 › SH3b_T 0.71 64.0 6.38e-01 100.0% 95.3%
164934 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.70 44.0 4.77e-01 84.3% 76.1%
3486327 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 42.0 4.82e-01 97.6% 85.0%
3539094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.49e-01 81.9% 85.0%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.69 47.0 4.22e-01 100.0% 51.3%
3651964 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.68 48.0 4.23e-01 98.8% 50.8%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 3.80e-01 81.9% 33.0%
3338134 4.1.1.155 ↗ beta barrels › SH3 › SH3 › SH3 › CRR42-like 0.68 54.0 5.66e-01 92.8% 94.7%
3323530 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.67 47.0 5.20e-01 100.0% 93.8%
3470815 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 49.0 5.29e-01 79.5% 91.4%
3853422 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 54.0 4.97e-01 98.8% 70.5%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.63 48.0 5.11e-01 100.0% 95.7%
3928987 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.71e-01 95.2% 82.5%
4946972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.46e-01 100.0% 74.4%
3556601 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.60 44.0 4.90e-01 95.2% 98.5%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.58 41.0 4.37e-01 94.0% 87.1%
315942 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 43.0 3.57e-01 100.0% 45.3%
2325643 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 43.0 3.68e-01 100.0% 49.6%
5065077 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 48.0 4.12e-01 100.0% 72.7%
4965478 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.53 46.0 3.93e-01 100.0% 71.9%
3900683 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.53 41.0 3.57e-01 86.7% 91.1%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.52 46.0 3.82e-01 100.0% 70.0%
3630404 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.52 41.0 3.39e-01 100.0% 48.0%
4030846 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 43.0 3.80e-01 100.0% 74.8%
3658097 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.50 44.0 3.13e-01 100.0% 78.5%