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OQ627807.1__WFD53095.1__X__00006

Bact-Vir

OQ627807.1__WFD53095.1__X__00006

Identity

Accession:
OQ627807 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_S193

TaxID: 3035949

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-35
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01381.29 best HTH_3 33.3 5.50e-08 87.5% 50.9%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ppxA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.88 73.0 6.01e-01 100.0% 52.5%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.87 72.0 5.37e-01 100.0% 37.6%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.86 73.0 5.89e-01 100.0% 50.8%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.86 72.0 5.06e-01 100.0% 31.1%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 72.0 5.80e-01 100.0% 51.6%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.85 71.0 4.53e-01 100.0% 20.6%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 71.0 5.74e-01 100.0% 50.8%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 69.0 6.07e-01 100.0% 62.7%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 65.0 4.69e-01 100.0% 31.4%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 5.34e-01 100.0% 55.7%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 67.0 5.36e-01 100.0% 48.5%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 66.0 6.02e-01 100.0% 71.1%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 5.45e-01 100.0% 57.1%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 4.88e-01 100.0% 42.5%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.29e-01 100.0% 55.2%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.77 62.0 3.81e-01 100.0% 15.5%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 64.0 5.45e-01 100.0% 58.2%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 60.0 4.67e-01 100.0% 39.0%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 4.83e-01 100.0% 47.8%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.75 61.0 4.14e-01 100.0% 25.2%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 58.0 5.18e-01 100.0% 59.3%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 5.15e-01 100.0% 63.0%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 60.0 5.31e-01 100.0% 62.7%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 57.0 4.59e-01 100.0% 42.1%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 59.0 5.49e-01 100.0% 75.0%
2k9qA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 59.0 5.60e-01 96.9% 77.5%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 4.79e-01 100.0% 54.0%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 53.0 4.49e-01 100.0% 50.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 50.0 4.01e-01 100.0% 50.0%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.77e-01 100.0% 69.2%
5macA02 3.20.20.110 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.61 44.0 2.61e-01 93.8% 9.0%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 44.0 3.95e-01 100.0% 90.0%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.52 36.0 2.49e-01 93.8% 17.4%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3990067 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.87 73.0 5.49e-01 100.0% 40.0%
4234863 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.87 72.0 5.58e-01 100.0% 42.7%
4173167 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.86 72.0 5.81e-01 100.0% 49.2%
5030070 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.85 70.0 5.82e-01 100.0% 53.3%
3981688 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.84 72.0 5.71e-01 100.0% 50.8%
4139052 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 68.0 5.29e-01 100.0% 42.7%
4541333 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 69.0 6.08e-01 100.0% 68.0%
4992594 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 69.0 6.23e-01 100.0% 71.1%
4030763 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 67.0 5.48e-01 100.0% 49.2%
3908306 101.1.1.101 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.81 65.0 5.52e-01 100.0% 55.0%
5043001 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.81 68.0 4.74e-01 100.0% 30.5%
3972638 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 65.0 5.36e-01 100.0% 50.8%
3979166 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.81 67.0 5.28e-01 100.0% 45.7%
5038965 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.81 66.0 6.07e-01 100.0% 71.1%
3718418 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 67.0 4.99e-01 100.0% 38.8%
5074438 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 67.0 6.37e-01 100.0% 82.5%
3968864 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 64.0 5.02e-01 100.0% 42.7%
3987666 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.80 66.0 4.91e-01 100.0% 38.8%
3795916 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 64.0 5.92e-01 100.0% 73.3%
3597464 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 66.0 5.48e-01 100.0% 55.0%
3944309 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 64.0 5.73e-01 100.0% 64.0%
5006645 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.79 68.0 5.57e-01 100.0% 53.3%
5078377 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 64.0 5.75e-01 100.0% 64.0%
4987653 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.79 65.0 5.97e-01 100.0% 71.1%
4250487 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.79 63.0 6.25e-01 100.0% 91.4%
4661582 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 63.0 4.43e-01 100.0% 29.1%
3975610 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 64.0 5.12e-01 100.0% 45.7%
3922450 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 64.0 6.11e-01 100.0% 80.0%
3586944 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.78 65.0 4.76e-01 100.0% 37.8%
3962903 101.1.2.486 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_58 0.78 63.0 6.07e-01 100.0% 82.5%
3505559 101.1.6.19 ↗ alpha arrays › HTH › HTH › TrpR › PAX 0.78 66.0 5.11e-01 100.0% 42.7%
3877765 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.78 65.0 6.19e-01 100.0% 82.5%
3289034 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.78 63.0 5.26e-01 100.0% 50.8%
4492035 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.78 62.0 5.00e-01 100.0% 45.7%
4414382 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.78 64.0 4.77e-01 100.0% 40.0%
4927516 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 5.33e-01 100.0% 53.3%
3278040 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 62.0 5.28e-01 100.0% 53.3%
4943227 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.77 66.0 5.99e-01 100.0% 71.1%
4986612 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 63.0 5.81e-01 100.0% 73.3%
3477795 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.77 63.0 5.77e-01 100.0% 71.1%
3289370 101.1.1.300 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.76 62.0 4.47e-01 100.0% 33.0%
3412196 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.76 63.0 6.01e-01 100.0% 82.5%
4470400 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 4.95e-01 100.0% 45.7%
4952630 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.76 62.0 4.89e-01 100.0% 42.7%
4501735 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 61.0 4.80e-01 100.0% 45.3%
3286340 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.76 60.0 4.48e-01 100.0% 35.5%
3287536 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 60.0 5.57e-01 100.0% 71.1%
4659432 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 60.0 4.74e-01 100.0% 45.3%
4333531 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 59.0 5.36e-01 100.0% 68.0%
3879118 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.75 61.0 5.32e-01 100.0% 58.2%
4169757 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.75 59.0 4.91e-01 100.0% 52.3%
3640035 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 59.0 4.52e-01 100.0% 37.6%
4612964 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.75 60.0 5.56e-01 100.0% 75.6%
5059633 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.74 59.0 5.20e-01 100.0% 60.0%
4007629 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.74 59.0 4.79e-01 100.0% 48.6%
4405096 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 59.0 4.78e-01 100.0% 45.7%
5077607 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.73 58.0 4.98e-01 100.0% 56.7%
3588551 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.73 58.0 4.96e-01 100.0% 53.3%
2332937 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 57.0 4.62e-01 100.0% 43.2%
3990848 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 61.0 5.24e-01 100.0% 61.8%
4162857 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.73 60.0 5.33e-01 100.0% 64.0%
4342758 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.72 57.0 5.00e-01 100.0% 61.8%
5007028 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 59.0 5.11e-01 100.0% 58.2%
4968186 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.72 60.0 5.49e-01 100.0% 71.1%
3291647 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.71 56.0 4.20e-01 100.0% 34.7%
5018477 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 59.0 4.71e-01 100.0% 47.1%
4090141 101.1.1.494 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_29 0.70 55.0 4.74e-01 100.0% 55.0%
4262428 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.70 56.0 3.27e-01 100.0% 10.6%
4966252 101.1.1.371 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.68 54.0 5.35e-01 100.0% 94.3%