Back to structures

OQ627808.1__WFD53193.1__X__00046

Bact-Vir

OQ627808.1__WFD53193.1__X__00046

Identity

Accession:
OQ627808 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-31_61-139
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07374.18 best DUF1492 22.1 2.00e-04 73.3% 45.0%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 62.0 7.12e-01 78.1% 97.5%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 51.0 6.37e-01 85.7% 100.0%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 44.0 5.72e-01 71.4% 98.3%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 33.0 3.73e-01 93.3% 53.7%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.14e-01 96.2% 69.5%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 43.0 4.84e-01 80.0% 80.0%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 43.0 4.53e-01 93.3% 73.4%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.66 49.0 4.57e-01 78.1% 65.6%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.64 58.0 5.25e-01 99.0% 95.1%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 35.0 3.50e-01 75.2% 51.9%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 48.0 3.86e-01 84.8% 66.5%
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.60 41.0 3.92e-01 96.2% 58.9%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 40.0 3.60e-01 72.4% 82.4%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 34.0 3.74e-01 79.0% 74.4%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 37.0 3.80e-01 99.0% 69.0%
5xnyA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.56 34.0 3.41e-01 74.3% 57.9%
1nktA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.55 46.0 3.88e-01 90.5% 93.2%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.55 38.0 3.24e-01 85.7% 43.9%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 40.0 3.66e-01 99.0% 58.0%
5tj5E00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.53 40.0 3.66e-01 96.2% 60.1%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 33.0 3.59e-01 75.2% 76.5%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 44.0 3.29e-01 92.4% 73.8%
5nx5B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 47.0 3.39e-01 99.0% 87.3%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 35.0 3.67e-01 100.0% 76.0%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.51 38.0 3.81e-01 96.2% 73.9%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 32.0 3.74e-01 100.0% 100.0%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.51 42.0 3.69e-01 96.2% 60.9%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 36.0 3.28e-01 74.3% 61.8%
3zsuA00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.50 41.0 4.01e-01 98.1% 80.5%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.50 37.0 3.30e-01 100.0% 54.1%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.50 35.0 3.94e-01 81.9% 98.7%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4303963 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 58.0 6.85e-01 78.1% 93.3%
4175748 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 56.0 6.34e-01 81.9% 85.0%
4336182 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 68.0 7.32e-01 90.5% 95.6%
3951829 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.87 59.0 6.53e-01 72.4% 85.9%
3587538 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 51.0 6.37e-01 71.4% 94.1%
4243530 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 48.0 6.07e-01 71.4% 92.3%
3282225 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 59.0 6.74e-01 80.0% 95.0%
4146353 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.84 53.0 6.03e-01 74.3% 83.7%
3284051 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.84 52.0 6.43e-01 74.3% 100.0%
3955987 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 55.0 5.76e-01 78.1% 73.7%
3291331 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 53.0 6.02e-01 77.1% 85.0%
3959929 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 56.0 6.39e-01 72.4% 91.3%
3279596 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.83 54.0 4.29e-01 83.8% 36.3%
4205790 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 56.0 6.34e-01 75.2% 90.0%
3288090 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 53.0 6.34e-01 75.2% 97.1%
4486973 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 54.0 6.00e-01 78.1% 82.4%
3163613 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 54.0 6.53e-01 81.9% 100.0%
4530655 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 55.0 5.70e-01 79.0% 72.0%
4237551 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 56.0 5.87e-01 75.2% 76.8%
3972638 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 50.0 6.21e-01 80.0% 100.0%
4388780 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.82 50.0 4.47e-01 73.3% 44.8%
3279339 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.81 53.0 4.26e-01 78.1% 37.3%
4289285 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 55.0 5.93e-01 74.3% 81.1%
3967026 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 54.0 6.26e-01 77.1% 94.7%
3959868 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 50.0 5.87e-01 74.3% 88.0%
3961841 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.81 50.0 5.94e-01 78.1% 92.9%
4454772 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 49.0 6.09e-01 76.2% 100.0%
4160122 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.80 54.0 4.73e-01 81.0% 48.0%
3284469 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 54.0 6.24e-01 80.0% 96.0%
4233279 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.79 53.0 3.94e-01 74.3% 29.6%
4372550 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 53.0 5.67e-01 82.9% 78.9%
4238054 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.79 51.0 3.83e-01 78.1% 28.2%
None 0.79 51.0 3.83e-01 78.1% 28.2%
3971665 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 53.0 6.13e-01 77.1% 96.0%
3971395 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 52.0 6.04e-01 77.1% 94.7%
4202221 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.78 48.0 5.88e-01 77.1% 95.6%
3281471 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 47.0 5.35e-01 74.3% 80.0%
None 0.78 50.0 4.91e-01 90.5% 61.8%
3969325 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 51.0 6.01e-01 74.3% 100.0%
3283374 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 54.0 5.73e-01 72.4% 80.0%
3964463 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 56.0 5.49e-01 74.3% 71.8%
3972713 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 55.0 5.79e-01 74.3% 86.3%
4524644 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.77 53.0 4.14e-01 78.1% 36.1%
2817645 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.76 56.0 6.21e-01 93.3% 100.0%
4470607 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.76 52.0 5.03e-01 92.4% 63.5%
3284461 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 49.0 3.64e-01 78.1% 27.2%
3288971 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.76 49.0 4.30e-01 78.1% 45.3%
4456068 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 57.0 5.84e-01 94.3% 83.0%
4279016 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.75 55.0 6.24e-01 82.9% 100.0%
4037682 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.75 49.0 5.06e-01 92.4% 70.0%
None 0.75 52.0 5.17e-01 94.3% 68.2%
3163616 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 58.0 6.13e-01 97.1% 89.4%
3284984 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.75 49.0 3.66e-01 81.9% 27.6%
4304581 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.74 49.0 5.16e-01 91.4% 75.5%
3971149 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 51.0 5.72e-01 78.1% 93.8%
4034281 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 64.0 6.38e-01 95.2% 95.5%
3974736 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 49.0 5.39e-01 80.0% 87.1%
3587755 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.72 51.0 4.71e-01 74.3% 59.2%
3973709 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.69 56.0 5.70e-01 99.0% 87.6%
5012037 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 51.0 5.52e-01 95.2% 91.1%
4577850 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.68 60.0 6.18e-01 97.1% 100.0%
3977260 101.1.1.39 alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ 0.68 61.0 5.80e-01 96.2% 95.8%
4317076 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 50.0 5.41e-01 94.3% 92.0%
4059731 101.1.1.64 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.66 51.0 5.15e-01 98.1% 81.9%
5024159 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 51.0 5.21e-01 98.1% 86.0%
3627888 101.1.1.64 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.64 52.0 4.86e-01 99.0% 72.0%
4024517 101.1.1.64 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.64 49.0 4.76e-01 98.1% 73.9%
4069056 101.1.1.22 alpha arrays › HTH › HTH › Three-helical HTH › PapB 0.63 45.0 5.05e-01 94.3% 98.7%
3959876 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.63 57.0 5.85e-01 100.0% 100.0%
3282047 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.62 43.0 4.40e-01 76.2% 74.0%
3280686 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.61 43.0 4.39e-01 72.4% 75.0%
None 0.60 52.0 5.27e-01 92.4% 100.0%
3620216 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 45.0 4.87e-01 91.4% 97.6%
4140444 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.60 52.0 5.19e-01 94.3% 97.3%
3913655 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.58 42.0 4.72e-01 74.3% 100.0%
4066789 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.58 43.0 4.00e-01 97.1% 61.5%
3614118 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.57 51.0 3.25e-01 99.0% 60.0%
3182958 101.1.1.64 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.57 51.0 4.70e-01 99.0% 77.8%
3869951 611.2.1.0 alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) 0.56 40.0 3.92e-01 98.1% 67.8%
3263033 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.56 37.0 3.67e-01 93.3% 63.6%
3810885 621.1.1.3 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.55 39.0 3.05e-01 75.2% 42.4%
4463061 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 43.0 4.25e-01 99.0% 86.1%