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OQ632216.1__WGL32516.1__Arash_gp65c__00065

Bact-Vir

OQ632216.1__WGL32516.1__Arash_gp65c__00065

Identity

Accession:
OQ632216 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_Arash

TaxID: 3038319

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-95
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00121__D18-100
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.71 45.0 4.98e-01 83.0% 80.8%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.36e-01 80.9% 78.9%
1wlyA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.53 40.0 3.33e-01 80.9% 72.0%
4dupA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.53 40.0 3.26e-01 81.9% 77.5%
1o89A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.53 40.0 3.44e-01 80.9% 70.6%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 39.0 3.10e-01 79.8% 83.4%
1qorA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.52 39.0 3.22e-01 79.8% 73.9%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 31.0 3.59e-01 78.7% 90.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4238582 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.80 46.0 5.62e-01 76.6% 90.0%
3970890 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.78 45.0 5.50e-01 73.4% 90.0%
1005326 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.78 46.0 5.39e-01 77.7% 85.9%
4531569 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.77 46.0 5.55e-01 79.8% 93.3%
3388070 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.76 44.0 5.32e-01 74.5% 90.0%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.71 39.0 3.80e-01 75.5% 48.6%
3845425 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 37.0 3.77e-01 71.3% 53.3%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 40.0 4.31e-01 75.5% 71.2%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 39.0 3.80e-01 75.5% 56.0%
5000523 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.61 44.0 4.10e-01 75.5% 60.0%
4511346 59.1.2.3 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Paf1 0.55 39.0 3.35e-01 74.5% 75.6%
3587587 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.52 37.0 3.53e-01 73.4% 95.5%
3478153 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.52 32.0 3.64e-01 80.9% 82.9%
3206868 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.29e-01 75.5% 54.8%
3475247 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.51 31.0 3.53e-01 80.9% 81.4%
5008091 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.51 32.0 3.65e-01 79.8% 85.7%
3791839 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.50 35.0 3.76e-01 83.0% 85.0%
D2 high residues 105-155
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 49.0 4.69e-01 74.5% 59.3%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.73 49.0 4.31e-01 70.6% 50.6%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 48.0 4.62e-01 74.5% 61.7%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.66 56.0 4.34e-01 96.1% 69.0%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 4.63e-01 100.0% 83.3%
3vnxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 44.0 3.01e-01 76.5% 23.6%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.62 48.0 3.04e-01 86.3% 28.7%
3evyA00 1.20.58.910 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 50.0 4.41e-01 100.0% 85.5%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.61 47.0 4.37e-01 88.2% 71.6%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 53.0 4.86e-01 100.0% 83.6%
1dk5A02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.59 47.0 4.39e-01 98.0% 95.8%
1avcA07 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.52 44.0 3.95e-01 100.0% 92.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3711600 604.9.1.0 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.73 61.0 5.30e-01 100.0% 83.5%
4053331 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.71 60.0 3.77e-01 100.0% 79.0%
3583859 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 58.0 4.13e-01 100.0% 40.6%
3186674 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.66 52.0 3.78e-01 90.2% 31.3%
3929097 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.65 54.0 4.14e-01 100.0% 87.7%
3736053 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 56.0 4.63e-01 100.0% 73.7%
223999 604.20.1.1 ↗ alpha bundles › Spectrin repeat-like › C-terminal domain in hypothetical protein BACOVA_03992 › C-terminal domain in hypothetical protein BACOVA_03992 › Polysacc_deac_3 0.64 51.0 5.23e-01 100.0% 100.0%
3276672 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.63 52.0 3.99e-01 100.0% 66.9%
4014533 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 45.0 3.89e-01 96.1% 55.8%
3331123 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.57 45.0 4.30e-01 88.2% 91.7%
4948017 101.1.4.88 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MCM 0.54 48.0 4.26e-01 100.0% 72.0%
3957044 316.1.1.39 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 0.51 41.0 3.02e-01 98.0% 45.5%