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OQ632216.1__WGL32523.1__Arash_gp72c__00072

Bact-Vir

OQ632216.1__WGL32523.1__Arash_gp72c__00072

Identity

Accession:
OQ632216 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-95
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rhcA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.57 41.0 2.86e-01 74.5% 37.9%
2o0bA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.53 43.0 3.39e-01 91.5% 96.3%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 31.0 3.42e-01 85.1% 73.3%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.52 31.0 3.32e-01 89.4% 67.1%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 38.0 3.41e-01 80.9% 75.0%
3slhA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.50 41.0 3.29e-01 92.6% 96.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964858 2498.1.1.103 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SpoVR 0.59 42.0 2.89e-01 74.5% 77.5%
5034952 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.58 37.0 2.68e-01 70.2% 22.6%
4945822 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.51 37.0 3.41e-01 77.7% 86.4%
D2 medium residues 102-137
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ilxA02 1.10.287.2170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.96 85.0 7.91e-01 97.2% 79.5%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.95 86.0 7.86e-01 100.0% 80.4%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.92 81.0 5.45e-01 100.0% 29.4%
2ahmG01 6.10.250.2820 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.91 80.0 5.75e-01 100.0% 38.4%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.90 76.0 4.75e-01 100.0% 19.0%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.89 78.0 6.14e-01 100.0% 52.7%
4c91A03 1.20.58.2150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.88 76.0 4.80e-01 100.0% 20.1%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.88 76.0 6.91e-01 100.0% 79.6%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.88 74.0 6.93e-01 100.0% 80.9%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.88 74.0 4.89e-01 100.0% 24.8%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 74.0 5.71e-01 100.0% 44.6%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.87 76.0 7.00e-01 100.0% 80.9%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 74.0 5.27e-01 100.0% 33.6%
2ygwA01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.86 76.0 4.87e-01 100.0% 23.5%
2kp7A01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.85 72.0 5.75e-01 100.0% 48.6%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.83 70.0 5.89e-01 100.0% 57.8%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 60.0 4.65e-01 100.0% 37.2%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.81 66.0 4.78e-01 100.0% 32.1%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.81 67.0 4.92e-01 94.4% 35.4%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.77 65.0 5.25e-01 100.0% 50.0%
3kbtA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 60.0 3.57e-01 100.0% 12.7%
5a4uF02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.74 59.0 4.23e-01 100.0% 33.9%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.73 60.0 4.72e-01 100.0% 71.8%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 58.0 4.81e-01 97.2% 91.5%
3k59A07 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.72 60.0 4.01e-01 97.2% 80.3%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.71 52.0 4.89e-01 80.6% 66.7%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 56.0 4.02e-01 100.0% 29.4%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 60.0 3.52e-01 100.0% 16.0%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.70 52.0 4.83e-01 100.0% 63.8%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.69 59.0 4.58e-01 100.0% 47.6%
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.69 55.0 3.90e-01 100.0% 26.1%
8h6rA01 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.69 53.0 4.33e-01 100.0% 45.9%
1ywqA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.68 57.0 3.62e-01 100.0% 61.8%
3c8vA01 6.10.140.2050 Special › Helix non-globular › Helix Hairpins › 0.65 55.0 5.23e-01 100.0% 81.0%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 51.0 3.40e-01 91.7% 22.6%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.64 47.0 4.25e-01 100.0% 55.4%
1y74A00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.63 46.0 4.33e-01 100.0% 66.7%
4ap9A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.61 46.0 4.12e-01 97.2% 55.0%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 49.0 4.03e-01 94.4% 57.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3691751 109.4.1.202 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.98 91.0 5.89e-01 100.0% 26.7%
4973477 159.1.1.1 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG 0.98 91.0 6.51e-01 100.0% 40.0%
3785190 102.1.1.30 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.98 91.0 7.04e-01 100.0% 51.4%
3182632 102.1.1.30 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.98 91.0 7.04e-01 100.0% 51.4%
4459514 2002.1.1.219 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Raffinose_syn 0.98 91.0 4.98e-01 100.0% 8.7%
3699444 3755.3.1.6 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Flagellar_rod 0.98 90.0 5.36e-01 100.0% 16.7%
3954382 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.97 90.0 5.75e-01 100.0% 24.8%
4010167 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.97 89.0 5.26e-01 100.0% 16.0%
3707236 3291.1.1.16 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Flagellar_rod 0.97 89.0 5.49e-01 100.0% 20.6%
3703141 109.4.1.3264 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Flagellar_rod 0.97 89.0 5.25e-01 100.0% 16.0%
3600887 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.97 89.0 5.34e-01 100.0% 17.6%
3595675 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.97 89.0 5.26e-01 100.0% 16.0%
3600038 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.97 89.0 5.26e-01 100.0% 16.0%
3512663 102.1.1.30 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.97 88.0 6.37e-01 100.0% 40.0%
4243775 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.97 89.0 6.64e-01 100.0% 45.0%
3578494 109.4.1.186 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3 0.97 85.0 5.00e-01 94.4% 14.8%
3797503 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.96 85.0 5.12e-01 94.4% 17.4%
None 0.96 85.0 5.16e-01 94.4% 18.4%
3425971 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.96 89.0 4.89e-01 100.0% 8.5%
4989575 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.96 87.0 4.66e-01 100.0% 5.5%
3592036 3291.1.1.16 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Flagellar_rod 0.96 86.0 5.18e-01 100.0% 17.1%
4102091 109.4.1.1563 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N 0.95 86.0 4.66e-01 100.0% 6.5%
2708987 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.95 85.0 6.58e-01 100.0% 48.0%
5026525 633.7.1.0 alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like 0.95 85.0 6.04e-01 100.0% 36.7%
3612508 4177.1.1.34 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Flagellar_rod 0.94 84.0 5.00e-01 100.0% 15.3%
3780980 109.4.1.190 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6 0.94 82.0 4.84e-01 94.4% 14.8%
5019369 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.94 84.0 4.75e-01 100.0% 11.1%
4647869 5001.1.1.87 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › EXS 0.94 83.0 4.73e-01 100.0% 11.2%
3219279 109.4.1.200 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14 0.93 80.0 5.30e-01 94.4% 26.2%
3209183 192.31.1.0 alpha bundles › Long alpha-hairpin › CP12 › CP12 0.93 84.0 7.76e-01 100.0% 80.0%
4620533 601.3.1.1 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.93 82.0 5.52e-01 100.0% 78.4%
3592652 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.92 81.0 4.91e-01 100.0% 17.6%
3597915 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.92 82.0 4.76e-01 100.0% 12.9%
3545084 5001.1.1.87 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › EXS 0.92 80.0 4.50e-01 100.0% 9.2%
3213117 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.91 80.0 5.79e-01 100.0% 37.9%
3836003 3684.1.1.2 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.90 78.0 4.78e-01 100.0% 17.6%
3233637 5001.1.1.84 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz 0.90 79.0 4.85e-01 100.0% 18.5%
3560446 109.4.1.3196 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_8, TPR_12, TPR_16 0.89 76.0 4.10e-01 100.0% 5.4%
3598836 604.7.1.0 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.88 77.0 5.41e-01 100.0% 32.7%
5004728 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.88 75.0 5.45e-01 100.0% 36.0%
3725456 604.3.1.24 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27980 0.87 75.0 5.73e-01 100.0% 42.4%
3474225 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.86 74.0 5.11e-01 100.0% 30.0%
4932313 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.83 70.0 5.84e-01 100.0% 55.4%
3757568 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.81 69.0 4.96e-01 100.0% 61.9%
3862881 109.4.1.1484 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_ZSWIM8 0.78 65.0 4.20e-01 100.0% 32.2%
3765228 109.4.1.1484 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_ZSWIM8 0.78 65.0 3.91e-01 100.0% 21.9%
5027990 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.77 64.0 5.09e-01 100.0% 47.4%
3220228 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.76 60.0 4.51e-01 100.0% 34.3%
3755130 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.76 63.0 4.62e-01 100.0% 64.8%
3307959 3835.1.1.3 alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › DUF842 0.74 63.0 5.24e-01 100.0% 53.8%
3929285 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.71 56.0 4.30e-01 100.0% 36.0%