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OQ632216.1__WGL32667.1__Arash_gp216__00216

Bact-Vir

OQ632216.1__WGL32667.1__Arash_gp216__00216

Identity

Accession:
OQ632216 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_Arash

TaxID: 3038319

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.69 49.0 4.48e-01 79.0% 66.3%
2yhsA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.66 48.0 4.23e-01 79.0% 56.7%
1dgnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 53.0 4.73e-01 93.5% 71.9%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 50.0 4.68e-01 98.4% 90.5%
1udyA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.60 45.0 3.79e-01 85.5% 51.7%
2uxwA02 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.57 46.0 3.80e-01 95.2% 47.9%
1umpA01 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 47.0 2.99e-01 95.2% 52.2%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 43.0 4.29e-01 82.3% 100.0%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.56 42.0 3.62e-01 82.3% 71.6%
1yeyA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.52 44.0 2.85e-01 95.2% 29.0%
1b1uA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.51 40.0 3.41e-01 93.5% 82.9%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 43.0 3.66e-01 96.8% 86.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3929285 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.69 52.0 4.41e-01 80.6% 93.0%
3864662 604.1.1.95 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C 0.66 48.0 4.33e-01 80.6% 92.2%
3969974 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.65 49.0 4.34e-01 83.9% 58.9%
3589737 604.27.1.0 ↗ alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac 0.62 45.0 4.52e-01 79.0% 93.8%
2073547 621.1.1.2 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.61 47.0 4.71e-01 85.5% 86.2%
4963871 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.58 42.0 2.80e-01 100.0% 19.2%
4920664 109.4.1.1259 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 0.57 39.0 3.79e-01 74.2% 63.0%
3404557 193.1.1.12 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › HAUS6_N 0.56 42.0 3.38e-01 85.5% 59.3%
3243842 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 3.49e-01 82.3% 99.1%
4673391 5069.1.1.61 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PF28674 0.54 48.0 3.63e-01 100.0% 43.4%
4989086 187.1.1.1 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.54 39.0 3.26e-01 80.6% 79.2%
4270265 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.53 41.0 3.57e-01 87.1% 67.0%
4243775 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.52 38.0 3.56e-01 82.3% 100.0%
D2 high residues 75-184
PDB
Domain cluster: rep: IMGVR_UViG_3300018080_003942-3300018080-Ga0180433_100002691__D213-306
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.84 73.0 6.69e-01 91.8% 74.6%
2o5iN07 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.83 77.0 7.59e-01 100.0% 98.3%
4c2mA06 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.82 76.0 6.55e-01 100.0% 97.6%
4kn7D01 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.79 68.0 6.38e-01 93.6% 89.5%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.73 42.0 4.76e-01 97.3% 75.6%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.72 43.0 5.16e-01 97.3% 89.2%
7s00D01 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.72 60.0 5.83e-01 100.0% 81.1%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.70 34.0 4.56e-01 86.4% 86.7%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.65 52.0 5.08e-01 85.5% 78.6%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.65 37.0 4.11e-01 90.0% 68.9%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 48.0 5.06e-01 85.5% 86.7%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 37.0 4.39e-01 70.0% 84.9%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.63 52.0 5.27e-01 88.2% 90.8%
1st6A04 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 55.0 5.41e-01 94.5% 98.3%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.60 51.0 4.40e-01 91.8% 77.2%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 52.0 5.00e-01 95.5% 91.1%
2xl4A00 1.20.120.1420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain 0.57 49.0 4.49e-01 94.5% 83.0%
5c4yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 45.0 4.17e-01 83.6% 72.8%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 47.0 4.74e-01 94.5% 92.7%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.54 38.0 3.86e-01 82.7% 73.8%
3ismC01 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.54 46.0 4.09e-01 91.8% 69.5%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 46.0 4.70e-01 94.5% 94.4%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 42.0 3.78e-01 83.6% 92.6%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 4.53e-01 88.2% 95.1%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 44.0 3.23e-01 90.9% 83.3%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 45.0 3.32e-01 93.6% 40.3%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 38.0 4.12e-01 97.3% 91.4%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 45.0 4.40e-01 95.5% 87.1%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 45.0 4.48e-01 94.5% 91.4%
4x28A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 37.0 3.72e-01 91.8% 72.6%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 44.0 4.34e-01 93.6% 91.2%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 44.0 4.23e-01 99.1% 97.7%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 43.0 4.29e-01 93.6% 89.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4513601 4246.1.1.0 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.85 79.0 4.96e-01 100.0% 21.3%
3959563 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.85 79.0 6.01e-01 100.0% 47.2%
4298800 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.84 79.0 5.94e-01 100.0% 45.3%
3596868 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.84 79.0 5.09e-01 100.0% 31.8%
4139172 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.84 78.0 5.78e-01 100.0% 44.2%
None — 0.83 78.0 7.10e-01 100.0% 79.3%
4419476 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.83 77.0 6.53e-01 100.0% 65.1%
4887358 4958.1.1.4 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.83 77.0 6.72e-01 100.0% 70.8%
4886353 4958.1.1.2 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_4 0.82 76.0 6.66e-01 100.0% 69.4%
4642508 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.82 76.0 5.70e-01 100.0% 44.7%
4647018 4958.1.1.2 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_4 0.82 76.0 6.33e-01 100.0% 62.3%
4025413 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.81 75.0 6.86e-01 100.0% 80.7%
4168246 4958.1.1.2 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_4 0.80 70.0 6.67e-01 100.0% 81.6%
1498377 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.79 58.0 6.33e-01 75.5% 97.8%
4493491 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.75 69.0 4.62e-01 100.0% 31.7%
3223457 101.1.2.661 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.73 45.0 3.26e-01 100.0% 24.3%
3472115 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.73 59.0 5.68e-01 85.5% 91.2%
3727634 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 44.0 5.40e-01 80.9% 98.6%
3930816 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.70 43.0 3.17e-01 100.0% 24.7%
3725615 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 45.0 5.12e-01 81.8% 88.7%
3465231 192.15.1.189 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Frigida 0.69 47.0 5.35e-01 82.7% 96.2%
5070237 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.69 52.0 5.60e-01 84.5% 96.7%
3261803 633.24.1.0 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.67 48.0 5.33e-01 92.7% 94.1%
4010684 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.66 60.0 4.02e-01 98.2% 46.6%
4236667 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.66 60.0 4.50e-01 98.2% 72.2%
3212271 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.66 58.0 5.13e-01 93.6% 74.7%
5007869 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.65 46.0 4.84e-01 82.7% 81.0%
3705127 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.64 44.0 4.72e-01 86.4% 83.2%
3280302 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 52.0 4.91e-01 87.3% 99.2%
4179875 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.63 41.0 3.77e-01 77.3% 50.3%
3427778 604.1.1.144 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26575 0.62 42.0 4.86e-01 79.1% 96.2%
3697292 633.24.1.0 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.62 48.0 5.11e-01 90.0% 94.7%
4968943 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 43.0 4.78e-01 84.5% 94.1%
4423188 3843.1.1.6 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF 0.61 38.0 4.35e-01 81.8% 86.3%
3062952 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 51.0 5.30e-01 91.8% 96.2%
3287193 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.59 53.0 4.05e-01 98.2% 87.2%
3416169 109.4.1.1391 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec10_HB, Sec10_N 0.59 52.0 3.22e-01 93.6% 32.0%
3992995 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 44.0 4.53e-01 82.7% 83.5%
4026286 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.58 47.0 4.42e-01 87.3% 91.9%
3938529 2006.1.1.9 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › UMPH-1 0.57 47.0 3.43e-01 87.3% 58.3%
3620551 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 52.0 4.66e-01 97.3% 92.0%
4327138 3826.1.1.25 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer 0.57 39.0 4.50e-01 71.8% 100.0%
3242177 2006.1.1.9 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › UMPH-1 0.57 47.0 3.39e-01 88.2% 57.3%
4957605 5076.2.1.13 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF7847 0.56 52.0 4.09e-01 100.0% 82.3%
None — 0.56 48.0 3.34e-01 92.7% 33.4%
4001820 5001.1.1.63 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab 0.56 43.0 3.74e-01 81.8% 77.6%
3774606 109.4.1.2221 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2 0.56 49.0 3.03e-01 99.1% 34.3%
3171634 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.55 44.0 3.53e-01 86.4% 49.3%
3734818 109.4.1.147 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind 0.54 47.0 2.99e-01 94.5% 19.1%
3226467 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 42.0 3.98e-01 83.6% 83.0%
59126 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.54 46.0 4.42e-01 94.5% 80.3%
3998554 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.53 34.0 3.18e-01 80.9% 51.1%
3783862 603.1.1.17 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.53 46.0 3.50e-01 94.5% 85.0%
3939322 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 2.76e-01 96.4% 16.9%
3857708 109.3.1.444 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Tmemb_185A 0.52 46.0 3.42e-01 94.5% 67.2%
D3 high residues 361-409
PDB
Domain cluster: representative
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.92 84.0 7.92e-01 100.0% 93.1%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.92 84.0 7.84e-01 100.0% 93.2%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.82 74.0 6.85e-01 100.0% 82.3%
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 66.0 5.91e-01 100.0% 95.7%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.75 62.0 6.20e-01 93.9% 100.0%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 63.0 4.69e-01 95.9% 52.4%
1ghjA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.74 64.0 5.55e-01 100.0% 84.8%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.74 62.0 6.13e-01 93.9% 100.0%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 61.0 5.25e-01 98.0% 82.9%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 50.0 3.02e-01 71.4% 11.7%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 60.0 4.76e-01 98.0% 84.5%
3v9fA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 47.0 2.87e-01 71.4% 10.6%
1uapA00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 62.0 4.61e-01 100.0% 64.1%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 55.0 3.24e-01 83.7% 34.4%
4owwB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 62.0 4.80e-01 98.0% 71.0%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 53.0 3.08e-01 81.6% 55.1%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.71 59.0 5.85e-01 93.9% 100.0%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 61.0 4.31e-01 98.0% 51.3%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.71 59.0 3.98e-01 91.8% 54.5%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.70 57.0 5.61e-01 93.9% 96.2%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 52.0 3.31e-01 81.6% 50.2%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 57.0 4.47e-01 93.9% 52.8%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 57.0 4.76e-01 98.0% 92.3%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.68 45.0 4.13e-01 71.4% 51.5%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 55.0 4.51e-01 98.0% 88.2%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 54.0 5.55e-01 95.9% 97.8%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 56.0 4.18e-01 98.0% 58.5%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.66 46.0 3.12e-01 73.5% 18.5%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.66 46.0 3.74e-01 87.8% 39.6%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 45.0 3.10e-01 71.4% 20.6%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 56.0 3.46e-01 98.0% 95.3%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 55.0 4.46e-01 98.0% 60.6%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 45.0 2.78e-01 73.5% 11.7%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.64 50.0 3.91e-01 87.8% 98.2%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 53.0 5.45e-01 95.9% 97.8%
3cihA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 50.0 3.75e-01 87.8% 93.5%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 46.0 4.12e-01 83.7% 63.2%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 49.0 4.75e-01 95.9% 79.6%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 51.0 3.54e-01 95.9% 75.6%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.26e-01 100.0% 94.5%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 49.0 4.73e-01 95.9% 91.4%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.60 43.0 3.95e-01 87.8% 58.5%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 42.0 2.92e-01 71.4% 21.5%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 48.0 4.54e-01 100.0% 73.8%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.59 44.0 3.67e-01 87.8% 63.1%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 42.0 2.63e-01 75.5% 14.2%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 47.0 3.14e-01 100.0% 27.5%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 45.0 4.41e-01 95.9% 79.3%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.51e-01 98.0% 66.4%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 40.0 3.89e-01 75.5% 72.7%
4urjD00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.56 39.0 2.71e-01 73.5% 63.8%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 41.0 3.16e-01 87.8% 78.9%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 38.0 2.41e-01 73.5% 12.3%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 41.0 2.70e-01 89.8% 18.6%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.50e-01 75.5% 95.4%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 33.0 3.59e-01 87.8% 87.9%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 46.0 2.81e-01 100.0% 16.3%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 35.0 3.29e-01 71.4% 91.2%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 35.0 3.39e-01 79.6% 60.0%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.62e-01 93.9% 83.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.43e-01 81.6% 60.0%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.51 38.0 2.76e-01 87.8% 65.9%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4625348 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.96 89.0 8.24e-01 100.0% 90.0%
4031789 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.94 88.0 8.14e-01 100.0% 88.3%
3369818 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.94 87.0 7.80e-01 100.0% 84.6%
4456732 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.94 88.0 7.26e-01 100.0% 67.5%
4397558 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.84 76.0 6.66e-01 100.0% 84.3%
4862778 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.82 70.0 5.22e-01 100.0% 39.7%
4997744 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 67.0 5.13e-01 98.0% 60.0%
4179590 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.78 69.0 5.16e-01 100.0% 71.7%
4200872 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.77 53.0 3.96e-01 71.4% 30.4%
5035446 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.76 64.0 6.23e-01 95.9% 96.4%
5066804 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.76 64.0 5.32e-01 98.0% 82.2%
4377694 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 65.0 5.32e-01 98.0% 95.6%
5042273 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 65.0 5.01e-01 98.0% 61.8%
3164388 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.75 63.0 5.80e-01 95.9% 87.7%
4968409 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.74 61.0 4.83e-01 91.8% 86.0%
4047622 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.74 63.0 4.85e-01 95.9% 51.8%
4623924 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.74 63.0 6.09e-01 95.9% 92.7%
4190130 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.74 63.0 5.14e-01 95.9% 57.8%
4264672 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 64.0 4.92e-01 98.0% 58.2%
5068438 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.73 62.0 4.66e-01 100.0% 68.5%
5017478 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.73 62.0 5.15e-01 95.9% 60.0%
5058752 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.72 55.0 3.24e-01 83.7% 31.8%
4112791 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.71 51.0 5.09e-01 77.6% 74.0%
1949626 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.71 59.0 5.66e-01 95.9% 88.1%
None — 0.71 56.0 3.53e-01 85.7% 60.4%
5026972 2003.1.2.38 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lycopene_cycl 0.71 54.0 3.21e-01 83.7% 34.1%
4499457 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 60.0 4.98e-01 98.0% 88.9%
4996351 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 60.0 4.98e-01 98.0% 71.6%
4382135 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.70 59.0 4.55e-01 95.9% 50.0%
1290334 101.1.2.179 ↗ alpha arrays › HTH › HTH › winged helix domain › ROXA-like_wH 0.70 58.0 4.55e-01 91.8% 93.1%
3908411 59.1.1.4 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Ctf8 0.69 49.0 3.81e-01 75.5% 78.2%
4383068 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 58.0 5.01e-01 98.0% 93.8%
4960280 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 48.0 3.84e-01 73.5% 55.8%
4278911 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.68 49.0 4.96e-01 79.6% 76.0%
3963617 2.4.1.4 ↗ beta barrels › OB-fold › MOP-like › MOP-like › FbpC_C_terminal 0.68 55.0 5.05e-01 91.8% 70.8%
4932492 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.67 56.0 5.31e-01 95.9% 83.3%
5044263 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 58.0 5.15e-01 95.9% 85.7%
4065466 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.67 53.0 4.52e-01 85.7% 66.3%
3623313 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.65 53.0 3.23e-01 91.8% 87.2%
4679015 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.63 49.0 4.27e-01 85.7% 67.5%
3811166 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 47.0 3.03e-01 87.8% 97.1%
4960648 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.62 52.0 4.46e-01 95.9% 60.0%
3672263 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 48.0 2.83e-01 89.8% 20.4%
3171117 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.61 50.0 4.14e-01 95.9% 88.4%
4969674 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 46.0 2.77e-01 83.7% 25.3%
3485184 5.1.4.219 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.60 46.0 2.64e-01 87.8% 23.7%
4019152 5.1.3.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TrAA12 0.60 51.0 3.02e-01 100.0% 87.9%
4518886 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.59 50.0 4.00e-01 95.9% 53.0%
5871 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.59 47.0 3.38e-01 87.8% 34.0%
3679910 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 41.0 2.74e-01 73.5% 17.1%
3236014 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 41.0 2.55e-01 73.5% 11.1%
3386881 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.58 48.0 3.99e-01 95.9% 58.9%
3260669 5.1.4.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.58 46.0 2.69e-01 91.8% 89.2%
3222225 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 4.26e-01 95.9% 87.7%
3268760 220.4.1.6 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 0.56 44.0 4.01e-01 91.8% 95.7%
3858171 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.55 41.0 2.71e-01 85.7% 60.4%
5029943 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.55 45.0 3.93e-01 95.9% 65.0%
4957662 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.54 45.0 4.06e-01 98.0% 74.3%
1099004 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.53 40.0 3.91e-01 98.0% 72.7%
4376273 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.53 40.0 3.53e-01 93.9% 68.9%
3166373 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.53 30.0 2.58e-01 85.7% 32.5%
3554209 6148.1.1.1 ↗ few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › EpCAM_N 0.52 35.0 3.76e-01 95.9% 87.5%
4467360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.98e-01 98.0% 80.0%
4393615 2.1.1.115 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PabTrmU54_TRAM_dom 0.52 39.0 3.77e-01 95.9% 83.1%
150402 392.1.1.1 ↗ beta meanders › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › Phage_Coat_A 0.51 41.0 3.75e-01 100.0% 67.2%
4066100 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.50 42.0 4.05e-01 100.0% 95.0%
D4 medium residues 226-353_414-453
PDB
Domain cluster: rep: PHAGE-A10--js4906-27-5_S32_scaffold_40_curated_closed_complete_prodigal-single.1__X__X__00102__D309-433_563-626
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04998.23 best RNA_pol_Rpb1_5 32.1 1.10e-07 54.2% 22.9%
D5 medium residues 457-544
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c4kA04 3.90.100.10 Alpha Beta › Alpha-Beta Complex › Ornithine Decarboxylase; Chain A, domain 4 › Orn/Lys/Arg decarboxylase, C-terminal domain 0.68 56.0 4.85e-01 86.4% 75.2%
2vycA04 3.90.100.10 Alpha Beta › Alpha-Beta Complex › Ornithine Decarboxylase; Chain A, domain 4 › Orn/Lys/Arg decarboxylase, C-terminal domain 0.67 56.0 4.94e-01 88.6% 76.0%
3n75A04 3.90.100.10 Alpha Beta › Alpha-Beta Complex › Ornithine Decarboxylase; Chain A, domain 4 › Orn/Lys/Arg decarboxylase, C-terminal domain 0.66 55.0 4.95e-01 88.6% 82.1%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.55 28.0 3.33e-01 94.3% 76.9%
3vs8H00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 43.0 2.88e-01 90.9% 51.6%
1vk1A01 3.90.1530.10 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain 0.52 38.0 3.66e-01 78.4% 89.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4176000 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.86 42.0 3.20e-01 100.0% 22.6%
4904906 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.83 44.0 3.39e-01 100.0% 26.6%
4794394 275.1.1.4 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_5 0.82 43.0 2.88e-01 100.0% 15.5%
4512991 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.82 43.0 3.02e-01 100.0% 18.8%
4233291 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.82 43.0 3.40e-01 100.0% 28.0%
4930320 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.81 54.0 6.59e-01 79.5% 100.0%
3772842 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.78 52.0 6.29e-01 80.7% 100.0%
4387121 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.77 43.0 2.85e-01 100.0% 15.8%
4090024 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.77 39.0 2.58e-01 100.0% 12.8%
4933334 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.76 56.0 6.40e-01 83.0% 98.5%
4953515 275.1.1.10 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › PF31083 0.76 53.0 6.22e-01 79.5% 98.5%
4284117 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.74 53.0 6.20e-01 75.0% 100.0%
5061607 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.71 54.0 6.04e-01 78.4% 100.0%
4964473 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.70 54.0 6.14e-01 80.7% 100.0%
4997505 275.1.1.2 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA_N 0.69 53.0 6.01e-01 79.5% 100.0%
5075572 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.69 50.0 5.82e-01 75.0% 100.0%
3927450 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.68 49.0 5.58e-01 77.3% 100.0%
4298800 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.68 56.0 3.94e-01 86.4% 36.7%
3959563 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.68 55.0 3.89e-01 84.1% 34.0%
4383217 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.68 56.0 5.61e-01 86.4% 94.4%
4005042 275.1.1.3 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › OKR_DC_1_C 0.67 57.0 3.77e-01 88.6% 30.6%
4084060 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.67 57.0 5.36e-01 89.8% 98.1%
4139172 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.67 56.0 3.87e-01 87.5% 33.5%
4290736 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.67 56.0 5.46e-01 87.5% 100.0%
3981527 275.1.1.3 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › OKR_DC_1_C 0.67 55.0 3.71e-01 86.4% 32.8%
4350668 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.67 50.0 5.60e-01 79.5% 98.6%
1180393 275.1.1.3 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › OKR_DC_1_C 0.67 56.0 4.58e-01 88.6% 62.9%
4126684 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.67 54.0 5.18e-01 85.2% 79.0%
4594378 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.66 54.0 5.58e-01 86.4% 100.0%
3519014 275.1.1.3 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › OKR_DC_1_C 0.66 55.0 4.56e-01 88.6% 64.7%
3239817 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.66 51.0 5.70e-01 80.7% 100.0%
4049714 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.66 52.0 5.61e-01 81.8% 97.3%
3285973 275.1.1.3 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › OKR_DC_1_C 0.66 55.0 5.35e-01 87.5% 84.2%
4128756 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.66 54.0 5.22e-01 87.5% 87.0%
4438374 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.66 54.0 5.44e-01 87.5% 98.9%
3811646 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.65 54.0 5.22e-01 89.8% 98.0%
4642508 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.64 53.0 3.77e-01 88.6% 33.7%
5028214 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.58 50.0 3.76e-01 92.0% 57.5%
4670865 7516.1.1.24 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 0.50 41.0 3.01e-01 94.3% 43.7%
D6 medium residues 551-594
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ui8J02 1.10.150.390 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.83 63.0 5.89e-01 88.6% 66.1%
1ujnA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.58 48.0 3.37e-01 100.0% 60.1%
2mphA01 1.10.720.80 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.58 39.0 3.18e-01 70.5% 48.3%
1uujA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.57 42.0 3.62e-01 79.5% 47.4%
3pxvB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 39.0 2.56e-01 72.7% 74.6%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.54 39.0 3.24e-01 84.1% 48.4%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 40.0 2.83e-01 88.6% 42.8%
6tgvA01 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.51 41.0 2.89e-01 97.7% 85.5%
3mgkB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 41.0 2.75e-01 95.5% 94.5%
4oifA02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.50 40.0 2.71e-01 100.0% 65.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3609667 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.87 76.0 4.90e-01 100.0% 22.6%
4015742 4954.1.1.0 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.87 74.0 4.85e-01 100.0% 24.0%
4876264 275.1.1.4 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_5 0.85 74.0 4.45e-01 100.0% 15.6%
4143836 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.84 72.0 4.35e-01 100.0% 15.1%
4021032 4954.1.1.0 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.84 72.0 4.63e-01 100.0% 21.5%
4794394 275.1.1.4 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_5 0.84 72.0 4.29e-01 100.0% 14.5%
3703407 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.84 74.0 4.96e-01 100.0% 27.5%
4480106 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.84 72.0 4.59e-01 100.0% 21.5%
3360993 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.83 71.0 4.74e-01 100.0% 25.6%
3867110 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.82 70.0 4.58e-01 100.0% 22.6%
5070514 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.82 70.0 4.30e-01 100.0% 17.2%
5039722 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.82 70.0 4.38e-01 100.0% 18.7%
5055205 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.81 72.0 5.16e-01 100.0% 35.8%
4943248 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.80 68.0 4.30e-01 100.0% 19.5%
4875013 275.1.1.4 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_5 0.80 68.0 4.47e-01 100.0% 23.6%
4953763 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.61 46.0 3.55e-01 86.4% 59.1%
4979783 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.58 44.0 3.37e-01 88.6% 56.5%
4501718 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.56 41.0 3.22e-01 84.1% 60.9%
5053450 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.56 42.0 3.26e-01 88.6% 56.5%
4046036 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.56 42.0 3.19e-01 88.6% 53.3%
5058875 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.54 39.0 3.11e-01 88.6% 54.8%
5001406 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.53 41.0 3.44e-01 93.2% 48.9%
4588385 109.4.1.15 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS 0.52 41.0 2.99e-01 100.0% 86.3%
3721047 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 40.0 2.62e-01 90.9% 70.0%
3412615 109.27.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.51 40.0 2.68e-01 100.0% 29.1%