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OQ646790.1__WGH15543.1__X__00008

Bact-Vir

OQ646790.1__WGH15543.1__X__00008

Identity

Accession:
OQ646790 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesyanzhinovviridae› Abidjanvirus› Pseudomonas_phage_PA_LZ03

TaxID: 3041206

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-42
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.83 69.0 5.28e-01 100.0% 41.1%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.79 68.0 5.56e-01 100.0% 53.5%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.78 68.0 5.22e-01 100.0% 64.0%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.76 66.0 5.10e-01 100.0% 63.6%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 66.0 6.37e-01 100.0% 95.5%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.76 67.0 5.01e-01 100.0% 57.4%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.76 66.0 5.02e-01 100.0% 58.7%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.76 64.0 5.44e-01 100.0% 72.1%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 64.0 6.08e-01 100.0% 93.8%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.75 64.0 4.91e-01 100.0% 63.0%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.73 62.0 4.72e-01 100.0% 57.7%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 60.0 5.41e-01 100.0% 80.7%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 60.0 4.62e-01 100.0% 42.6%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.72 60.0 4.52e-01 100.0% 56.3%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.72 60.0 4.93e-01 100.0% 71.4%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.71 59.0 4.37e-01 100.0% 44.6%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 4.77e-01 87.2% 67.8%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 58.0 4.42e-01 100.0% 40.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 4.35e-01 87.2% 50.7%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 56.0 4.28e-01 100.0% 50.0%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.66 56.0 4.98e-01 97.4% 76.8%
1i8dC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 53.0 4.28e-01 100.0% 46.6%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 52.0 4.76e-01 100.0% 78.9%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.62 42.0 2.98e-01 71.8% 22.8%
4v15A01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.60 50.0 3.46e-01 100.0% 27.1%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 48.0 3.27e-01 97.4% 38.9%
2g3mA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 41.0 3.44e-01 100.0% 38.2%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 45.0 3.32e-01 97.4% 33.3%
2g7iA02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.57 47.0 4.07e-01 97.4% 89.2%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.57 47.0 3.23e-01 100.0% 38.9%
3ttgA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.57 46.0 2.77e-01 100.0% 13.4%
5i0qB02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.56 46.0 4.07e-01 97.4% 82.3%
2o3oA02 3.30.310.160 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 0.55 41.0 3.08e-01 87.2% 33.3%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.55 46.0 3.59e-01 100.0% 47.9%
2ftxA00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.55 41.0 3.30e-01 82.1% 38.2%
4gucA00 2.60.40.3720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.30e-01 100.0% 41.7%
1owbA01 2.20.28.60 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 37.0 3.61e-01 84.6% 63.3%
4k91A02 2.60.410.10 Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain 0.54 39.0 3.19e-01 84.6% 89.0%
1xp4C02 2.60.410.10 Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain 0.53 37.0 3.04e-01 76.9% 87.8%
4b60A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.04e-01 100.0% 31.5%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 43.0 3.40e-01 100.0% 89.2%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 2.79e-01 100.0% 28.4%
2qcuA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.51 40.0 2.78e-01 100.0% 23.0%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 41.0 3.20e-01 100.0% 67.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4125814 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.82 72.0 5.78e-01 100.0% 52.0%
5078547 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.80 69.0 5.17e-01 100.0% 40.0%
4949095 2004.1.1.10 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.80 68.0 3.86e-01 100.0% 9.7%
3204011 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.79 67.0 5.12e-01 100.0% 42.2%
4245518 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.78 68.0 5.53e-01 100.0% 53.3%
5005052 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 67.0 6.02e-01 100.0% 90.9%
4060488 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.77 67.0 5.36e-01 100.0% 50.0%
4217174 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 65.0 5.46e-01 100.0% 61.4%
4123274 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.76 67.0 5.96e-01 100.0% 81.8%
4962327 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.76 65.0 5.88e-01 100.0% 80.0%
5064515 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.75 64.0 5.64e-01 100.0% 76.7%
3251414 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 59.0 4.29e-01 89.7% 33.6%
5069810 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.74 63.0 5.04e-01 100.0% 57.5%
4945827 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.74 63.0 4.86e-01 100.0% 60.0%
4952455 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.74 62.0 4.86e-01 100.0% 60.7%
4309719 325.1.6.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.73 63.0 4.15e-01 100.0% 24.8%
3604610 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 63.0 5.37e-01 100.0% 78.5%
5012286 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.73 62.0 5.44e-01 100.0% 78.3%
4951165 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.73 62.0 5.63e-01 100.0% 83.6%
3959311 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.73 62.0 4.70e-01 100.0% 45.3%
5036381 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.72 61.0 5.39e-01 100.0% 78.3%
2528374 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.72 60.0 4.92e-01 100.0% 59.7%
5081809 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 60.0 5.21e-01 100.0% 66.2%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 4.85e-01 89.7% 59.4%
3724971 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 60.0 4.41e-01 100.0% 46.4%
4933883 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.71 61.0 5.71e-01 100.0% 84.0%
4986252 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 55.0 5.30e-01 87.2% 77.8%
119323 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.70 58.0 5.19e-01 100.0% 79.3%
4668791 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.70 58.0 4.34e-01 100.0% 47.6%
3268048 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 56.0 5.02e-01 100.0% 70.0%
4950522 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.68 57.0 5.21e-01 100.0% 78.2%
5021656 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.68 57.0 5.36e-01 100.0% 84.0%
4424147 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.67 53.0 5.34e-01 92.3% 95.0%
3946849 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 54.0 5.10e-01 100.0% 94.0%
5000722 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 51.0 3.69e-01 89.7% 70.0%
3513769 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 54.0 4.52e-01 100.0% 57.3%
4130681 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.64 53.0 4.41e-01 100.0% 58.7%
3603282 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.63 48.0 3.31e-01 89.7% 29.7%
3176896 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.62 45.0 3.42e-01 100.0% 28.8%
4933787 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.61 44.0 2.91e-01 76.9% 17.6%
3212139 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.61 48.0 4.83e-01 97.4% 89.7%
4414062 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 42.0 4.24e-01 97.4% 82.5%
3409882 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.59 45.0 4.08e-01 94.9% 58.6%
4932909 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.57 44.0 3.26e-01 100.0% 92.6%
4448587 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.57 44.0 3.34e-01 100.0% 32.0%
4028319 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 44.0 3.26e-01 100.0% 44.4%
3411605 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.57 43.0 4.02e-01 94.9% 64.8%
4072610 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 48.0 4.21e-01 97.4% 70.0%
3630572 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 45.0 4.68e-01 89.7% 100.0%
3505002 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.55 41.0 4.27e-01 97.4% 97.1%
3839745 319.3.1.1 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.54 41.0 3.34e-01 100.0% 80.0%
3792565 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 43.0 3.35e-01 97.4% 76.0%
3908598 391.1.1.2 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWC 0.54 44.0 3.84e-01 97.4% 58.5%
5001728 2002.1.1.52 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 0.53 39.0 2.50e-01 100.0% 17.0%
3853734 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 40.0 3.28e-01 100.0% 57.0%