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OQ674082.1__WFS86246.1__vBVhaSMAG7_029__00029

Bact-Vir

OQ674082.1__WFS86246.1__vBVhaSMAG7_029__00029

Identity

Accession:
OQ674082 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Taxonomy

Vibrio_phage_vB_VhaS_MAG7

TaxID: 3037703

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: rep: MG592670.1__AUS02581.1__NVP2159B_50__00050__D4-53
D2 high residues 64-123
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.80 65.0 4.84e-01 86.7% 60.9%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.79 67.0 5.36e-01 93.3% 94.8%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 66.0 6.62e-01 95.0% 96.7%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.77 68.0 5.47e-01 96.7% 51.8%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.76 65.0 6.32e-01 95.0% 94.0%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.75 66.0 5.64e-01 96.7% 61.1%
2oezA02 1.10.3900.10 Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like 0.74 54.0 3.92e-01 96.7% 28.8%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 61.0 5.66e-01 90.0% 82.4%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.73 56.0 4.91e-01 86.7% 56.2%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 61.0 5.97e-01 96.7% 87.7%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.72 61.0 4.93e-01 95.0% 64.0%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 60.0 5.42e-01 93.3% 95.1%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.71 60.0 5.60e-01 96.7% 96.1%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 59.0 5.64e-01 96.7% 88.7%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 57.0 4.88e-01 95.0% 56.7%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.69 58.0 5.69e-01 96.7% 87.7%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 57.0 5.31e-01 96.7% 76.9%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 57.0 3.99e-01 95.0% 30.7%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.67 57.0 5.11e-01 96.7% 69.4%
3h1nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 55.0 4.46e-01 95.0% 65.0%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 53.0 4.98e-01 95.0% 71.8%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.66 56.0 4.47e-01 98.3% 48.0%
1kyoF00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.64 50.0 4.68e-01 85.0% 74.3%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 52.0 4.10e-01 93.3% 71.5%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.61 45.0 4.49e-01 91.7% 78.5%
4finB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.12e-01 100.0% 37.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3398320 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.84 67.0 6.32e-01 100.0% 72.9%
3626122 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.81 67.0 6.78e-01 91.7% 96.7%
4801882 192.1.1.1 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › MCPsignal 0.77 68.0 6.71e-01 98.3% 95.3%
4179648 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.76 61.0 5.94e-01 85.0% 89.1%
3240217 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.75 65.0 5.66e-01 98.3% 88.4%
4052416 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.74 62.0 5.66e-01 98.3% 71.2%
3179819 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 60.0 4.61e-01 96.7% 48.6%
3060781 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.71 59.0 4.53e-01 95.0% 51.0%
5024718 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.71 61.0 4.20e-01 96.7% 67.2%
4274282 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.71 56.0 5.65e-01 96.7% 90.0%
3994890 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.70 63.0 5.17e-01 100.0% 81.0%
3704019 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 60.0 5.02e-01 98.3% 61.0%
3686421 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.69 59.0 5.17e-01 96.7% 77.8%
3711300 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.69 59.0 4.40e-01 98.3% 39.4%
3737296 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.69 57.0 4.53e-01 96.7% 50.8%
3248269 174.1.1.82 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7789 0.68 60.0 4.76e-01 100.0% 52.8%
3741115 109.4.1.138 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PAT1 0.68 57.0 3.68e-01 96.7% 25.0%
3355246 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.68 57.0 5.27e-01 96.7% 76.2%
4494085 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.67 54.0 4.98e-01 90.0% 68.8%
3593227 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.59 49.0 3.64e-01 95.0% 35.8%
4970333 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.57 50.0 4.32e-01 100.0% 69.5%