Back to structures

OQ674106.1__WFS70159.1__PVA65_000012__00012

Bact-Vir

OQ674106.1__WFS70159.1__PVA65_000012__00012

Identity

Accession:
OQ674106 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-71
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.71 53.0 4.61e-01 83.6% 51.1%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.70 50.0 3.94e-01 81.8% 35.6%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 51.0 4.48e-01 80.0% 57.0%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.69 61.0 4.97e-01 100.0% 79.4%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 48.0 3.68e-01 72.7% 90.8%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.69 54.0 3.82e-01 92.7% 27.7%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 57.0 4.37e-01 100.0% 96.3%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.66 53.0 4.49e-01 90.9% 80.4%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.65 49.0 3.81e-01 85.5% 78.4%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 53.0 4.19e-01 92.7% 91.1%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 40.0 3.44e-01 72.7% 37.2%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 47.0 3.64e-01 85.5% 47.1%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.63 55.0 4.28e-01 100.0% 89.3%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 42.0 4.20e-01 89.1% 69.0%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 44.0 4.19e-01 80.0% 64.2%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 51.0 4.20e-01 96.4% 60.6%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 51.0 4.46e-01 100.0% 77.3%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.60 42.0 3.37e-01 76.4% 36.4%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.59 40.0 3.36e-01 72.7% 38.6%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 45.0 3.90e-01 83.6% 52.2%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 43.0 3.40e-01 80.0% 69.0%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.47e-01 100.0% 81.2%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 41.0 3.36e-01 72.7% 43.8%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 44.0 4.08e-01 90.9% 62.7%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 40.0 3.49e-01 72.7% 72.3%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 42.0 4.03e-01 83.6% 75.7%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.57 45.0 4.02e-01 89.1% 84.1%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 3.96e-01 100.0% 68.8%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 41.0 3.98e-01 80.0% 67.7%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.57 48.0 4.10e-01 98.2% 79.6%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 38.0 4.20e-01 90.9% 100.0%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 43.0 3.78e-01 87.3% 96.6%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 42.0 3.36e-01 83.6% 77.8%
1wjjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.33e-01 81.8% 90.9%
2p6rA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 2.98e-01 89.1% 89.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 43.0 4.06e-01 89.1% 84.1%
1zymA01 3.50.30.10 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain 0.55 39.0 3.14e-01 78.2% 95.0%
1wi5A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.42e-01 72.7% 94.7%
3qikA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 39.0 3.56e-01 85.5% 78.6%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.59e-01 78.2% 63.5%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 42.0 2.80e-01 100.0% 89.0%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 3.63e-01 100.0% 54.5%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.29e-01 98.2% 70.3%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.52 39.0 3.30e-01 83.6% 98.0%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 42.0 3.05e-01 98.2% 41.4%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.51 40.0 2.53e-01 94.5% 63.7%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 40.0 3.33e-01 90.9% 58.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3468148 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 63.0 4.29e-01 100.0% 25.1%
4309285 3844.2.1.2 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.76 63.0 4.37e-01 92.7% 28.6%
3587925 220.1.1.242 beta barrels › PH domain-like › PH domain-like › PH domain-like › EbsA 0.75 59.0 5.29e-01 85.5% 66.7%
3826272 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.75 63.0 3.89e-01 100.0% 15.8%
2096143 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 51.0 4.53e-01 81.8% 50.6%
4082530 865.1.1.2 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C 0.74 54.0 4.26e-01 89.1% 39.1%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.73 59.0 5.52e-01 94.5% 71.4%
5014250 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 54.0 4.80e-01 80.0% 87.5%
4078246 9.4.1.1 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.70 62.0 5.59e-01 100.0% 93.3%
3232437 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 59.0 4.76e-01 100.0% 56.4%
5079258 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.68 49.0 5.35e-01 81.8% 93.3%
4992470 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.67 51.0 5.01e-01 83.6% 83.3%
1921564 101.1.2.237 alpha arrays › HTH › HTH › winged helix domain › ThcOx 0.67 50.0 3.99e-01 81.8% 40.0%
4530314 375.13.1.0 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.65 52.0 5.15e-01 89.1% 84.5%
5023740 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.12e-01 100.0% 92.0%
2507075 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.65 46.0 4.12e-01 78.2% 50.6%
4447447 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.17e-01 87.3% 92.0%
5058682 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.64 45.0 2.95e-01 72.7% 80.9%
4940356 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.64 54.0 3.81e-01 100.0% 30.5%
3235669 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 57.0 4.37e-01 100.0% 47.2%
3226293 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 54.0 3.54e-01 100.0% 21.9%
3937635 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.63 49.0 3.53e-01 100.0% 26.8%
4119222 375.1.1.135 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev 0.63 49.0 5.10e-01 87.3% 100.0%
4478971 4.1.1.174 beta barrels › SH3 › SH3 › SH3 › DUF951 0.63 54.0 5.16e-01 100.0% 83.1%
3243873 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 55.0 3.52e-01 100.0% 25.5%
3469751 2.3.1.2 beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.63 46.0 3.52e-01 81.8% 86.9%
4991612 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 48.0 4.48e-01 89.1% 87.1%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 47.0 4.87e-01 81.8% 90.0%
5026901 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 47.0 4.61e-01 85.5% 81.7%
2391944 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.60 43.0 3.83e-01 80.0% 50.0%
4307219 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 42.0 4.20e-01 83.6% 76.4%
3581251 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 41.0 3.62e-01 72.7% 57.6%
3365759 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 36.0 3.97e-01 83.6% 80.0%
3178950 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.59 45.0 3.89e-01 87.3% 95.8%
3312712 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 38.0 3.99e-01 83.6% 74.0%
4276957 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 41.0 4.13e-01 76.4% 98.2%
3972150 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.58 38.0 2.51e-01 83.6% 14.4%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 46.0 4.48e-01 96.4% 87.7%
5047657 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 44.0 4.46e-01 85.5% 89.1%
4926837 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 47.0 4.62e-01 96.4% 86.7%
4059146 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 43.0 4.13e-01 83.6% 96.9%
3704121 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 39.0 3.93e-01 83.6% 70.7%
3331838 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 36.0 3.76e-01 80.0% 72.0%
3464671 4.1.1.136 beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.56 47.0 4.41e-01 100.0% 82.9%
3290662 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 43.0 3.40e-01 100.0% 37.7%
3928803 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.56 45.0 3.18e-01 94.5% 27.0%
4959480 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.56 43.0 4.25e-01 89.1% 98.3%
3351355 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.55 35.0 3.54e-01 80.0% 63.6%
4990102 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 39.0 4.20e-01 96.4% 95.6%
3438045 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.54 36.0 3.45e-01 72.7% 58.5%
4947252 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 36.0 3.89e-01 78.2% 86.7%
4944397 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 4.18e-01 83.6% 92.0%
2028019 4.1.1.136 beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.53 44.0 4.27e-01 100.0% 87.9%
4989647 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.53 37.0 3.78e-01 78.2% 76.4%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.52 42.0 2.46e-01 90.9% 40.8%
3889228 386.1.1.66 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 0.50 39.0 3.56e-01 100.0% 62.8%