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OQ674106.1__WFS70223.1__PVA65_000076__00076

Bact-Vir

OQ674106.1__WFS70223.1__PVA65_000076__00076

Identity

Accession:
OQ674106 ↗
Kingdom:
phage

Quality

96.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.55e-01 96.4% 98.5%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 59.0 5.39e-01 100.0% 74.4%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 58.0 5.53e-01 98.2% 92.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.57e-01 98.2% 95.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.41e-01 98.2% 90.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 5.04e-01 96.4% 82.8%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 50.0 4.68e-01 87.5% 68.5%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 43.0 4.18e-01 89.3% 61.5%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 51.0 5.08e-01 96.4% 88.1%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.28e-01 98.2% 93.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 49.0 4.67e-01 87.5% 74.6%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 49.0 4.70e-01 89.3% 76.1%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.61 43.0 4.32e-01 75.0% 71.9%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 41.0 3.09e-01 82.1% 27.9%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 49.0 4.67e-01 89.3% 77.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 47.0 4.51e-01 87.5% 80.3%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 3.80e-01 96.4% 55.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.51e-01 96.4% 72.9%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 47.0 4.35e-01 89.3% 70.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.65e-01 100.0% 73.7%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 47.0 4.37e-01 89.3% 71.2%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 3.92e-01 94.6% 73.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.64e-01 100.0% 85.5%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.64e-01 87.5% 51.2%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 3.85e-01 89.3% 67.7%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 40.0 3.46e-01 75.0% 91.8%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 45.0 4.36e-01 87.5% 78.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 3.83e-01 100.0% 54.9%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.75e-01 96.4% 100.0%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 3.98e-01 87.5% 67.5%
2ls0101 2.40.50.670 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme 0.56 43.0 3.62e-01 91.1% 94.7%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.56e-01 83.9% 20.7%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 43.0 3.58e-01 89.3% 75.0%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 37.0 2.74e-01 82.1% 26.3%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.54 42.0 3.99e-01 91.1% 75.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.17e-01 96.4% 74.6%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 4.04e-01 89.3% 83.3%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.58e-01 89.3% 20.3%
3wa1A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 42.0 3.15e-01 94.6% 96.9%
7x4qA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 40.0 3.02e-01 85.7% 80.8%
3kyhC01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.52 39.0 2.75e-01 91.1% 80.0%
2ytyA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.60e-01 89.3% 80.7%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.52 36.0 3.19e-01 73.2% 77.0%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.88e-01 83.9% 82.1%
1pmhX00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 2.83e-01 87.5% 88.0%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.67e-01 85.7% 85.3%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.98e-01 100.0% 79.2%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.53e-01 83.9% 60.3%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 36.0 2.92e-01 76.8% 84.9%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.51 42.0 4.07e-01 98.2% 95.3%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.37e-01 75.0% 100.0%
1a94A00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 36.0 3.15e-01 82.1% 47.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4547406 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 54.0 4.84e-01 96.4% 65.0%
3210707 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 56.0 5.54e-01 96.4% 98.3%
3839369 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 53.0 4.81e-01 96.4% 65.0%
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.89e-01 100.0% 69.3%
3388362 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 53.0 2.98e-01 96.4% 7.6%
4423306 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.65 52.0 4.82e-01 96.4% 69.3%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 56.0 4.85e-01 100.0% 67.8%
4339993 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.64 52.0 4.52e-01 96.4% 57.8%
3498145 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 5.32e-01 100.0% 89.1%
3842884 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.63 49.0 4.67e-01 87.5% 70.6%
2674741 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 46.0 4.71e-01 87.5% 83.6%
3496355 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.40e-01 96.4% 100.0%
3556735 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.63 49.0 4.52e-01 89.3% 65.8%
3623785 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 53.0 4.92e-01 98.2% 80.0%
3894564 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.63 49.0 4.37e-01 87.5% 62.7%
3880422 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.63 50.0 4.74e-01 89.3% 75.0%
3898211 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 49.0 4.57e-01 89.3% 71.6%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 49.0 4.57e-01 87.5% 71.4%
1094905 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 49.0 4.57e-01 87.5% 71.4%
3368743 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 48.0 4.74e-01 85.7% 95.0%
3891033 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 48.0 4.45e-01 87.5% 68.5%
3896688 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 48.0 4.79e-01 89.3% 85.0%
3764537 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 48.0 4.34e-01 89.3% 65.0%
3939093 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.59 47.0 4.33e-01 100.0% 68.0%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.59 49.0 4.71e-01 96.4% 84.6%
3917584 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.59 47.0 4.41e-01 89.3% 71.4%
4014812 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.58 47.0 4.65e-01 91.1% 90.0%
3899072 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 45.0 4.29e-01 89.3% 74.3%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.57 47.0 4.50e-01 92.9% 80.0%
3993317 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 42.0 4.00e-01 82.1% 70.0%
4667221 2003.1.2.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.57 46.0 3.30e-01 96.4% 70.6%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.57 45.0 4.41e-01 96.4% 79.7%
3936276 207.1.1.156 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.57 41.0 2.83e-01 80.4% 49.3%
3707477 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.68e-01 87.5% 22.5%
3709493 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.14e-01 85.7% 33.8%
4156192 243.3.1.52 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.55 43.0 2.64e-01 89.3% 32.2%
3999890 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 38.0 2.34e-01 75.0% 99.2%
3707788 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 42.0 2.85e-01 87.5% 36.1%
3958768 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 4.01e-01 98.2% 88.7%
3952939 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.53 43.0 3.99e-01 94.6% 96.0%
4399169 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.53 40.0 3.96e-01 85.7% 78.3%
4931657 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.53 40.0 3.64e-01 83.9% 60.0%
4034031 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.53 44.0 4.29e-01 100.0% 90.8%
3653284 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 40.0 3.40e-01 89.3% 79.0%
4962087 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 38.0 3.74e-01 80.4% 75.0%
4888112 1.2.1.2 beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain › Calici_coat_C 0.52 40.0 3.10e-01 100.0% 94.3%
3289156 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 40.0 3.28e-01 89.3% 77.5%
1141950 3449.1.1.1 a+b two layers › Cpn0803 › Cpn0803 › Cpn0803 › CT_584-like 0.52 38.0 2.75e-01 80.4% 43.4%
3700010 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 2.60e-01 89.3% 39.9%
4344482 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 35.0 3.73e-01 82.1% 88.9%
4985494 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 43.0 2.59e-01 100.0% 13.3%
4973274 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.51 40.0 4.05e-01 87.5% 90.9%
4051690 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.51 41.0 3.46e-01 94.6% 80.0%
4011441 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.51 42.0 2.55e-01 98.2% 74.8%
4149372 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 3.63e-01 83.9% 78.5%
4928706 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.51 39.0 3.72e-01 87.5% 87.1%
4966375 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 41.0 2.48e-01 100.0% 13.3%