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OQ687052.1__WHM49650.1__X__00034

Bact-Vir

OQ687052.1__WHM49650.1__X__00034

Identity

Accession:
OQ687052 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peeveelvirus› Staphylococcus_phage_L-m44

TaxID: 3034677

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-104
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.59 51.0 3.66e-01 98.0% 91.5%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.59 41.0 3.83e-01 71.6% 83.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 31.0 3.93e-01 74.5% 98.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 35.0 3.99e-01 97.1% 83.6%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 3.17e-01 82.4% 57.5%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 3.37e-01 98.0% 84.0%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.56 44.0 3.23e-01 85.3% 87.3%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 38.0 3.99e-01 94.1% 77.2%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 3.22e-01 94.1% 91.3%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 48.0 3.44e-01 100.0% 86.6%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 37.0 3.59e-01 85.3% 62.8%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.68e-01 80.4% 90.3%
5yy8A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 41.0 3.10e-01 84.3% 82.7%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.22e-01 98.0% 98.5%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.53 44.0 3.12e-01 98.0% 86.1%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 42.0 2.98e-01 89.2% 88.1%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 3.17e-01 95.1% 95.7%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 38.0 3.52e-01 87.3% 60.2%
4yy8A02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 39.0 2.83e-01 79.4% 94.3%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 38.0 3.58e-01 79.4% 87.0%
3ii7A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 43.0 3.21e-01 95.1% 91.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.86e-01 91.2% 92.0%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 38.0 3.75e-01 87.3% 72.9%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 30.0 3.36e-01 94.1% 74.7%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.51 44.0 3.11e-01 98.0% 84.6%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 3.06e-01 99.0% 95.1%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 43.0 3.21e-01 97.1% 90.7%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 3.16e-01 99.0% 86.5%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.60e-01 81.4% 65.1%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 43.0 3.07e-01 96.1% 92.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3239788 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.66 39.0 3.22e-01 79.4% 32.1%
3594326 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.59 39.0 4.38e-01 86.3% 87.5%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 33.0 3.86e-01 85.3% 80.0%
3810743 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 47.0 3.61e-01 88.2% 91.4%
4616630 5.1.5.79 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WDR90_beta-prop_4th 0.58 47.0 3.37e-01 88.2% 96.2%
3422639 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.58 47.0 3.25e-01 89.2% 97.4%
3606615 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.58 39.0 4.11e-01 88.2% 77.8%
3453746 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.57 46.0 3.33e-01 90.2% 89.5%
3458192 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.57 42.0 3.05e-01 79.4% 54.2%
3812754 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 48.0 3.76e-01 95.1% 92.2%
3803793 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.56 46.0 3.35e-01 90.2% 96.6%
4871225 5.1.3.197 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Glyoxal_oxid_N 0.55 38.0 3.27e-01 71.6% 81.1%
2462934 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 3.20e-01 85.3% 80.4%
3778085 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 42.0 2.85e-01 83.3% 71.9%
3385399 5.1.4.259 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz 0.55 45.0 3.04e-01 91.2% 72.4%
3810658 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 43.0 3.43e-01 85.3% 75.3%
3816768 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 45.0 3.38e-01 92.2% 94.5%
5050109 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.55 34.0 3.65e-01 80.4% 74.1%
3383615 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 46.0 3.35e-01 94.1% 90.3%
3314307 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.54 44.0 3.10e-01 91.2% 86.3%
3502305 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 42.0 3.22e-01 84.3% 81.1%
3940017 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.53 44.0 3.27e-01 93.1% 96.9%
3364560 5.1.3.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2 0.53 45.0 3.29e-01 94.1% 89.4%
4021342 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 3.11e-01 91.2% 81.2%
3576958 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 40.0 3.30e-01 81.4% 94.4%
3832491 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 46.0 3.30e-01 99.0% 95.3%
3467472 5.1.5.146 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.53 43.0 3.18e-01 92.2% 82.7%
3755410 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 43.0 2.87e-01 90.2% 96.4%
5055131 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 41.0 3.59e-01 87.3% 86.1%
4297152 5.1.3.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NANM 0.52 44.0 3.09e-01 96.1% 99.2%
3626691 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 36.0 3.64e-01 93.1% 72.0%
185622 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.52 38.0 3.52e-01 82.4% 58.8%
3719969 5.1.3.160 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.52 42.0 3.03e-01 93.1% 91.6%
3847019 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 3.11e-01 96.1% 82.4%
3608449 5.1.4.235 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st 0.51 44.0 2.94e-01 97.1% 94.7%
4024093 5.1.4.259 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz 0.51 43.0 3.08e-01 97.1% 83.3%
4962256 101.1.2.937 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25943 0.51 36.0 3.52e-01 72.5% 74.5%
3493765 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.86e-01 93.1% 96.1%
3923579 5.1.4.167 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.51 43.0 3.05e-01 97.1% 95.0%
None — 0.51 44.0 3.11e-01 99.0% 86.5%
4079810 3939.1.1.185 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › WD40, Beta-prop_NOL10_N 0.51 44.0 2.98e-01 99.0% 65.6%
3826459 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.51 40.0 3.09e-01 88.2% 77.7%
5070281 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 3.21e-01 96.1% 87.5%
3722077 5.1.4.499 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_NOL10_N, WD40_CDC20-Fz 0.51 42.0 3.13e-01 97.1% 89.8%
3455400 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.50 40.0 2.96e-01 90.2% 97.5%
4177392 5.1.3.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NANM 0.50 43.0 3.05e-01 98.0% 92.4%
3461718 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 40.0 3.19e-01 90.2% 95.7%
3378955 5.1.4.259 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz 0.50 38.0 2.66e-01 84.3% 66.8%