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OQ689083.1__WIL01608.1__LGFCKLCI_00008__00008

Bact-Vir

OQ689083.1__WIL01608.1__LGFCKLCI_00008__00008

Identity

Accession:
OQ689083 ↗
Kingdom:
phage

Quality

64.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jedunavirus› Klebsiella_phage_vB_KpnM_SCNJ1-Y

TaxID: 3038276

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 140-238
PDB
Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 27.9 3.70e-06 100.0% 95.9%
PF13455.13 MUG113 25.4 2.30e-05 85.9% 91.8%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xkrA00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.70 52.0 4.10e-01 78.8% 67.8%
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 35.0 3.62e-01 100.0% 51.6%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 4.35e-01 89.9% 87.5%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.56 40.0 3.94e-01 90.9% 67.9%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 43.0 4.39e-01 98.0% 81.8%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.55 48.0 4.69e-01 100.0% 85.5%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 4.26e-01 76.8% 100.0%
6w6vE01 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.53 42.0 3.72e-01 89.9% 83.2%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.52 38.0 3.61e-01 77.8% 96.7%
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 2.72e-01 79.8% 80.9%
3tp2B02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 38.0 3.89e-01 79.8% 98.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4016088 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.80 75.0 7.34e-01 100.0% 95.2%
4151900 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.72 43.0 3.80e-01 100.0% 41.0%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.64 34.0 4.47e-01 100.0% 100.0%
3940654 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 43.0 3.37e-01 70.7% 79.1%
3987406 3115.6.1.1 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.56 40.0 4.51e-01 80.8% 100.0%
3613200 304.134.1.0 ↗ a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like 0.56 41.0 4.32e-01 77.8% 97.8%
3648422 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.52 36.0 3.30e-01 70.7% 77.7%
3931081 304.57.1.1 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.50 41.0 3.76e-01 90.9% 82.2%
4246590 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.50 37.0 2.71e-01 79.8% 80.7%
D2 medium residues 1-50
PDB
D3 medium residues 51-106
PDB