←Back to structures

OQ689083.1__WIL01609.1__LGFCKLCI_00009__00009

Bact-Vir

OQ689083.1__WIL01609.1__LGFCKLCI_00009__00009

Identity

Accession:
OQ689083 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jedunavirus› Klebsiella_phage_vB_KpnM_SCNJ1-Y

TaxID: 3038276

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.18e-01 86.0% 73.8%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 3.94e-01 84.2% 77.7%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 3.77e-01 86.0% 80.2%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.85e-01 86.0% 71.0%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 3.89e-01 91.2% 76.9%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 46.0 3.53e-01 86.0% 59.9%
2nr4A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.05e-01 100.0% 60.2%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.78e-01 86.0% 82.4%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.80e-01 86.0% 70.6%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 36.0 3.07e-01 77.2% 37.4%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 50.0 3.22e-01 100.0% 19.3%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.84e-01 86.0% 81.1%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.67e-01 86.0% 65.8%
4gn1C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.30e-01 86.0% 54.7%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.99e-01 91.2% 84.6%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.57 46.0 3.04e-01 100.0% 19.3%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 41.0 3.46e-01 78.9% 67.3%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.36e-01 86.0% 61.4%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.74e-01 96.5% 71.2%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.57e-01 84.2% 52.0%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.56 41.0 3.33e-01 82.5% 42.7%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 41.0 3.03e-01 84.2% 43.2%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.41e-01 91.2% 63.8%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.55 38.0 2.65e-01 75.4% 43.9%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 45.0 3.77e-01 98.2% 77.7%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.55 43.0 3.98e-01 87.7% 100.0%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 37.0 2.79e-01 71.9% 86.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.69e-01 86.0% 85.1%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.40e-01 84.2% 71.6%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.39e-01 89.5% 67.5%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 40.0 2.78e-01 80.7% 95.6%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.44e-01 86.0% 85.7%
2fsdA00 2.60.40.2460 Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain 0.53 38.0 3.16e-01 77.2% 40.0%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 38.0 2.88e-01 82.5% 72.1%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 40.0 2.78e-01 86.0% 92.2%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.52 42.0 3.42e-01 100.0% 68.4%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 37.0 3.16e-01 78.9% 71.4%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.52 37.0 3.30e-01 84.2% 100.0%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 40.0 2.53e-01 86.0% 91.7%
3v76A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.53e-01 91.2% 57.8%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.22e-01 84.2% 74.3%
1vpaA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 37.0 2.54e-01 80.7% 39.8%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4263982 375.1.1.302 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP 0.66 59.0 6.09e-01 96.5% 100.0%
3502336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 47.0 4.05e-01 80.7% 84.0%
3472295 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.65 45.0 4.10e-01 78.9% 52.5%
3249359 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 50.0 3.91e-01 86.0% 64.0%
3799496 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 52.0 3.71e-01 91.2% 53.1%
3916753 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 50.0 3.64e-01 86.0% 47.5%
4348945 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 50.0 3.94e-01 86.0% 64.2%
3270411 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 48.0 3.93e-01 84.2% 67.0%
3172487 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.64 49.0 3.63e-01 86.0% 59.4%
3937835 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.63 45.0 3.62e-01 77.2% 61.7%
3230771 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.63 45.0 3.99e-01 78.9% 56.7%
3622643 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.63 46.0 4.08e-01 78.9% 60.0%
4646593 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 48.0 3.76e-01 87.7% 42.2%
3895387 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 50.0 4.06e-01 91.2% 74.8%
934 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 46.0 3.94e-01 84.2% 77.7%
3268833 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 49.0 3.61e-01 89.5% 54.4%
3260650 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 49.0 4.06e-01 91.2% 71.8%
3255028 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 46.0 3.39e-01 86.0% 52.9%
3990213 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.61 43.0 3.69e-01 77.2% 74.0%
953 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 46.0 3.99e-01 86.0% 80.0%
4075150 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.61 44.0 3.17e-01 82.5% 27.2%
4637164 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 46.0 3.52e-01 86.0% 52.4%
3388697 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.60 44.0 3.96e-01 78.9% 56.2%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 43.0 3.46e-01 82.5% 40.0%
3262357 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 45.0 3.44e-01 86.0% 46.0%
3515382 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 48.0 3.85e-01 91.2% 75.8%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.93e-01 84.2% 82.2%
3471368 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 44.0 3.69e-01 84.2% 80.9%
3486733 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.59 47.0 4.03e-01 91.2% 80.6%
3791839 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.59 44.0 4.04e-01 84.2% 62.5%
3756645 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 44.0 3.52e-01 86.0% 69.2%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.59 43.0 4.13e-01 82.5% 74.3%
3789579 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.58e-01 84.2% 80.9%
3578693 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 44.0 3.33e-01 86.0% 48.8%
2141376 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.58 41.0 3.84e-01 84.2% 57.9%
4943079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.42e-01 87.7% 54.2%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.45e-01 84.2% 100.0%
4000646 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 44.0 3.51e-01 86.0% 75.2%
3533574 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 44.0 3.37e-01 86.0% 53.8%
3940063 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 44.0 3.81e-01 86.0% 77.9%
3226939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.88e-01 91.2% 76.0%
3233874 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 39.0 3.35e-01 70.2% 79.6%
3490216 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.57 43.0 3.47e-01 86.0% 74.4%
3412178 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.57 41.0 3.92e-01 89.5% 65.2%
3482663 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.57 40.0 3.85e-01 84.2% 62.9%
2095 4976.1.1.1 ↗ beta sandwiches › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › DUF3048_C 0.57 46.0 3.70e-01 100.0% 43.1%
5061066 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.57 45.0 4.09e-01 91.2% 71.2%
4027577 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.43e-01 86.0% 77.6%
939 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 42.0 3.36e-01 86.0% 61.4%
3597563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.41e-01 86.0% 64.0%
3607724 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.56 45.0 3.52e-01 91.2% 73.1%
3927945 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.49e-01 86.0% 61.7%
3515688 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.57e-01 91.2% 84.2%
3905525 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.53e-01 91.2% 67.5%
3861490 220.1.1.118 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.55 43.0 3.70e-01 91.2% 86.0%
3273564 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 42.0 3.80e-01 91.2% 81.1%
3164898 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.55 40.0 3.54e-01 84.2% 54.7%
3484705 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.54 42.0 3.32e-01 91.2% 65.7%
3252809 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 41.0 3.33e-01 89.5% 60.8%
3389451 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.54 39.0 3.71e-01 84.2% 62.7%
1034013 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.54 46.0 4.22e-01 100.0% 100.0%
3214168 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.24e-01 84.2% 64.8%
3473111 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 42.0 2.51e-01 91.2% 19.2%
4467867 3784.1.1.0 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.53 46.0 3.45e-01 100.0% 84.1%
3895743 3615.1.1.7 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CD20 0.53 39.0 2.95e-01 91.2% 61.6%
3244743 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 38.0 2.87e-01 78.9% 36.0%
4542558 105.2.1.71 ↗ alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › HMMR_N 0.52 38.0 2.45e-01 78.9% 21.5%
3501905 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.35e-01 86.0% 78.0%
3247469 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.51 42.0 3.44e-01 100.0% 90.4%
262552 52.1.1.1 ↗ beta sandwiches › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › PPV_E2_N 0.51 36.0 3.07e-01 75.4% 77.8%
3937603 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 39.0 3.09e-01 84.2% 42.5%