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OQ689089.1__WHB31245.1__X__00022

Bact-Vir

OQ689089.1__WHB31245.1__X__00022

Identity

Accession:
OQ689089 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-86
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.74 62.0 5.52e-01 96.8% 64.5%
3dktA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.68 57.0 5.00e-01 93.7% 67.4%
1qu9A00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.62 52.0 4.18e-01 95.2% 50.4%
3oxnA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 47.0 3.91e-01 85.7% 82.6%
2lc0A00 3.30.2320.60 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › FhaA, phosphopeptide-binding domain (DUF3662) 0.61 52.0 4.09e-01 95.2% 65.2%
3i3fB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.60 51.0 4.15e-01 98.4% 53.9%
5hweA01 3.30.1330.170 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A 0.60 52.0 4.46e-01 100.0% 72.9%
2esnA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 47.0 3.95e-01 87.3% 90.1%
7febA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.59 46.0 3.66e-01 85.7% 99.2%
2qi2A03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.59 49.0 4.31e-01 93.7% 66.0%
4v1ag00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 50.0 3.80e-01 95.2% 47.3%
3obyA03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.58 47.0 4.14e-01 92.1% 65.7%
1vw4400 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 49.0 3.84e-01 100.0% 78.3%
2ywmA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 44.0 3.73e-01 90.5% 64.3%
2y8vA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 41.0 2.73e-01 79.4% 23.9%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 40.0 3.20e-01 81.0% 67.9%
1ghhA00 3.30.910.10 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like 0.54 42.0 3.93e-01 87.3% 69.1%
6c5cA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.19e-01 92.1% 53.8%
1vp4A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 39.0 2.71e-01 79.4% 42.4%
2kg4A00 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.54 44.0 3.39e-01 98.4% 61.2%
6b10A00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.53 43.0 2.89e-01 100.0% 96.2%
4r5dA02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.53 38.0 2.80e-01 77.8% 35.5%
1nijA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 3.18e-01 95.2% 48.8%
1xknA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.52 41.0 2.68e-01 93.7% 61.2%
4fajA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.52 40.0 2.87e-01 88.9% 63.1%
3k50A03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.52 40.0 2.97e-01 85.7% 91.0%
1p3y100 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.52 40.0 2.99e-01 87.3% 46.2%
1f2dA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 3.75e-01 98.4% 89.2%
1mg5A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 2.86e-01 93.7% 33.7%
7kseA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 37.0 2.98e-01 81.0% 53.4%
4v1ap00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 3.65e-01 92.1% 64.9%
4jhmA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.51 37.0 2.49e-01 77.8% 26.1%
2jfnA02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 3.42e-01 92.1% 91.2%
2ac4A02 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 39.0 3.16e-01 90.5% 93.0%
4ii2A01 3.50.50.80 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1 0.50 39.0 3.28e-01 87.3% 84.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942344 2485.3.1.19 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 0.80 70.0 4.47e-01 98.4% 22.1%
4873245 2485.3.1.2 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.76 64.0 5.09e-01 96.8% 46.9%
5002389 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.76 66.0 4.24e-01 96.8% 26.8%
5083051 2485.3.1.12 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.75 65.0 4.17e-01 96.8% 34.8%
4411262 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.64 45.0 4.40e-01 90.5% 65.8%
4212654 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.64 51.0 4.78e-01 88.9% 71.2%
4226935 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.63 51.0 3.66e-01 90.5% 30.0%
4526391 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.63 51.0 4.12e-01 90.5% 45.6%
3191024 301.7.1.1 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.63 54.0 4.27e-01 100.0% 47.9%
3948034 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.61 48.0 4.05e-01 87.3% 87.3%
3291341 7588.1.1.1 a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB 0.61 40.0 3.39e-01 77.8% 38.2%
3618941 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.61 50.0 3.71e-01 90.5% 39.4%
3835475 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.60 50.0 4.11e-01 93.7% 54.2%
1954435 301.7.1.3 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Amido_AtzD_TrzD 0.60 52.0 4.46e-01 100.0% 72.9%
1520268 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.60 46.0 4.35e-01 85.7% 76.9%
None 0.60 50.0 3.98e-01 93.7% 71.5%
3508237 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.60 43.0 2.96e-01 77.8% 39.1%
3793412 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.59 50.0 3.90e-01 93.7% 50.7%
3489448 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.59 51.0 4.69e-01 100.0% 85.9%
2883152 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.59 49.0 3.90e-01 92.1% 49.6%
4808072 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.59 49.0 3.90e-01 93.7% 48.1%
4558877 301.6.1.0 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.59 52.0 4.11e-01 100.0% 50.8%
3503316 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.59 46.0 3.79e-01 85.7% 88.6%
3173157 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.59 47.0 3.85e-01 90.5% 56.7%
4954546 4038.1.1.0 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.59 48.0 3.14e-01 92.1% 20.7%
3277433 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.58 48.0 3.96e-01 92.1% 52.2%
4975680 301.2.1.0 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.58 51.0 4.02e-01 100.0% 50.4%
3945722 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.58 45.0 4.30e-01 87.3% 73.3%
3740019 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 45.0 3.77e-01 88.9% 51.7%
3581013 2004.1.1.364 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.58 41.0 2.51e-01 77.8% 24.5%
4059350 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.58 44.0 4.28e-01 87.3% 73.3%
3979358 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.56 44.0 3.07e-01 85.7% 93.8%
3177337 7523.1.1.5 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PDT 0.56 45.0 3.94e-01 93.7% 63.8%
3408007 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.56 47.0 3.94e-01 93.7% 60.0%
2472967 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.56 42.0 3.37e-01 82.5% 61.8%
3206346 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.56 46.0 3.54e-01 93.7% 40.6%
5056012 301.9.1.0 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain 0.56 46.0 4.38e-01 93.7% 81.3%
1420617 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.56 49.0 3.84e-01 100.0% 78.3%
3486916 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 45.0 3.96e-01 92.1% 66.3%
5021936 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 39.0 2.88e-01 77.8% 47.4%
3665790 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.55 39.0 3.40e-01 76.2% 80.0%
4937 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.54 42.0 3.93e-01 87.3% 69.1%
None 0.54 42.0 2.65e-01 85.7% 40.7%
4864720 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.53 44.0 3.86e-01 95.2% 92.1%
3519680 2485.1.1.59 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › CLIC-like_N 0.53 42.0 3.78e-01 87.3% 77.8%
3794092 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 43.0 3.71e-01 92.1% 60.0%
3573670 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.53 43.0 3.80e-01 92.1% 66.3%
4124548 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.53 39.0 2.64e-01 79.4% 32.1%
3630115 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.53 43.0 3.79e-01 92.1% 66.3%
3260528 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.53 45.0 3.76e-01 96.8% 90.0%
3994195 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.52 42.0 3.72e-01 92.1% 66.3%
4009839 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 33.0 3.01e-01 81.0% 43.2%
3281796 2002.1.1.101 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N 0.52 38.0 2.47e-01 79.4% 18.3%
3311849 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.52 43.0 3.63e-01 96.8% 83.5%
5081349 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.52 36.0 3.07e-01 73.0% 51.4%
3286621 247.1.1.12 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.52 38.0 2.49e-01 79.4% 41.1%
3738480 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.51 43.0 3.77e-01 93.7% 95.8%
3941115 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 41.0 3.72e-01 90.5% 80.0%
3283537 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.51 38.0 2.61e-01 82.5% 40.8%
4241550 247.1.1.12 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.51 37.0 2.60e-01 81.0% 32.6%