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OQ689089.1__WHB31265.1__X__00054
Bact-VirOQ689089.1__WHB31265.1__X__00054
Identity
- Accession:
- OQ689089 ↗
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Taxonomy
TaxID: 3038283
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-92
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.63 | 43.0 | 3.92e-01 | 71.4% | 71.6% |
| 3t57A02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.60 | 40.0 | 4.24e-01 | 71.4% | 78.7% |
| 2vy1A00 | 1.10.4180.10 | Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY | 0.57 | 48.0 | 4.02e-01 | 98.8% | 96.3% |
| 3q9dB01 | 1.20.58.1050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 39.0 | 3.91e-01 | 71.4% | 98.9% |
| 2h7oA01 | 1.20.120.1330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain | 0.57 | 46.0 | 4.12e-01 | 90.5% | 74.0% |
| 6ofsA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.56 | 40.0 | 3.00e-01 | 75.0% | 67.9% |
| 4lctB00 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 47.0 | 3.21e-01 | 97.6% | 55.7% |
| 3fp3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 43.0 | 3.76e-01 | 85.7% | 54.8% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 44.0 | 4.60e-01 | 88.1% | 98.7% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.54 | 39.0 | 3.86e-01 | 77.4% | 98.9% |
| 2fbnA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 45.0 | 3.77e-01 | 95.2% | 83.0% |
| 2og9A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 37.0 | 3.28e-01 | 72.6% | 47.7% |
| 3rc3A05 | 1.20.58.1080 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 43.0 | 3.98e-01 | 91.7% | 77.0% |
| 3u4qA02 | 1.10.274.50 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.53 | 38.0 | 3.15e-01 | 75.0% | 74.0% |
| 2qq6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 37.0 | 3.43e-01 | 75.0% | 56.9% |
| 1ctnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 40.0 | 2.65e-01 | 84.5% | 27.3% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028797 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.72 | 46.0 | 5.10e-01 | 75.0% | 83.1% |
| 3410892 | 101.1.1.505 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4769 | 0.71 | 54.0 | 5.33e-01 | 82.1% | 86.7% |
| 4030520 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 50.0 | 4.46e-01 | 81.0% | 87.8% |
| None | — | 0.65 | 44.0 | 4.54e-01 | 70.2% | 80.0% | |
| 3505603 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 44.0 | 4.56e-01 | 70.2% | 78.8% |
| 3404571 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.64 | 45.0 | 4.64e-01 | 73.8% | 92.5% |
| 3416804 | 109.4.1.1140 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11 | 0.64 | 50.0 | 3.53e-01 | 84.5% | 28.7% |
| 3926773 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.64 | 49.0 | 4.74e-01 | 92.9% | 73.7% |
| None | — | 0.61 | 42.0 | 4.22e-01 | 70.2% | 72.9% | |
| 3268562 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.61 | 50.0 | 4.27e-01 | 94.0% | 60.0% |
| 3660863 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.59 | 48.0 | 3.85e-01 | 89.3% | 77.1% |
| 5026112 | 3457.1.1.0 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease | 0.59 | 44.0 | 3.26e-01 | 79.8% | 73.2% |
| 3664730 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.58 | 50.0 | 3.46e-01 | 98.8% | 87.2% |
| 3681598 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.58 | 50.0 | 3.84e-01 | 100.0% | 86.8% |
| 3661592 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.58 | 47.0 | 3.32e-01 | 90.5% | 41.8% |
| 3364476 | 109.4.1.1779 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_3 | 0.57 | 49.0 | 3.67e-01 | 100.0% | 65.8% |
| 3366136 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.57 | 43.0 | 3.92e-01 | 83.3% | 98.3% |
| 3714425 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.57 | 44.0 | 3.98e-01 | 84.5% | 60.9% |
| 3422425 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 45.0 | 3.71e-01 | 86.9% | 75.5% |
| 3652824 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 45.0 | 4.28e-01 | 86.9% | 75.0% |
| 3645620 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 45.0 | 2.98e-01 | 90.5% | 29.5% |
| 3663346 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.56 | 45.0 | 3.11e-01 | 90.5% | 37.7% |
| 3819779 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 45.0 | 4.15e-01 | 90.5% | 83.6% |
| 3373217 | 109.4.1.1275 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 | 0.55 | 47.0 | 2.96e-01 | 100.0% | 28.3% |
| 3454002 | 109.4.1.1282 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 | 0.55 | 48.0 | 3.86e-01 | 100.0% | 79.8% |
| 4943201 | 181.1.1.32 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54 | 0.55 | 38.0 | 3.88e-01 | 73.8% | 75.3% |
| 5041952 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 45.0 | 3.98e-01 | 100.0% | 90.4% |
| 3934654 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 43.0 | 3.45e-01 | 90.5% | 86.7% |
| 3349269 | 109.46.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH | 0.52 | 44.0 | 3.86e-01 | 96.4% | 68.5% |
| 3590073 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.52 | 36.0 | 3.61e-01 | 72.6% | 92.9% |
| 3199140 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.51 | 35.0 | 3.46e-01 | 73.8% | 68.4% |
D2
high
residues 114-202
Domain cluster:
rep: KJ019146.1__AIX42271.1__Syn7803C16_52__00052__D2-97
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10544.16 best | T5orf172 | 27.5 | 5.00e-06 | 87.6% | 93.9% |
| PF13455.13 | MUG113 | 39.3 | 1.10e-09 | 73.0% | 97.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2n17A00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.69 | 37.0 | 4.43e-01 | 85.4% | 80.4% |
| 2hp7A00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.69 | 49.0 | 3.93e-01 | 75.3% | 64.8% |
| 7dm9A01 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.67 | 47.0 | 3.87e-01 | 74.2% | 67.5% |
| 3kvpA00 | 6.20.140.10 | Special › Other non-globular › Immunoglobulin-like › | 0.57 | 23.0 | 3.20e-01 | 79.8% | 74.4% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.55 | 40.0 | 4.06e-01 | 75.3% | 98.9% |
| 1cjxA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 37.0 | 3.20e-01 | 73.0% | 86.0% |
| 1rifA01 | 3.30.780.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.51 | 40.0 | 4.00e-01 | 96.6% | 83.3% |
| 2jfdA03 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.51 | 31.0 | 3.47e-01 | 79.8% | 81.8% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 34.0 | 3.35e-01 | 97.8% | 65.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946107 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.83 | 72.0 | 7.07e-01 | 92.1% | 96.8% |
| 3689357 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.79 | 73.0 | 5.84e-01 | 100.0% | 65.5% |
| 3735748 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.78 | 72.0 | 5.74e-01 | 100.0% | 62.9% |
| 4016088 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.78 | 70.0 | 6.65e-01 | 97.8% | 98.1% |
| 3197583 | 821.1.1.10 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 | 0.76 | 70.0 | 5.36e-01 | 100.0% | 80.8% |
| 3400351 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.68 | 43.0 | 5.09e-01 | 82.0% | 95.0% |
| 4342450 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.54 | 50.0 | 3.05e-01 | 100.0% | 26.3% |
| 3416455 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.54 | 35.0 | 4.10e-01 | 82.0% | 98.3% |
| 4141823 | 1.1.3.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ | 0.53 | 39.0 | 3.41e-01 | 76.4% | 67.7% |
| 3649276 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.52 | 38.0 | 3.47e-01 | 77.5% | 100.0% |
| 4577912 | 1.1.5.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD | 0.52 | 43.0 | 3.47e-01 | 96.6% | 79.0% |
| 4612662 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.52 | 36.0 | 3.62e-01 | 73.0% | 88.2% |
| 3405569 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.52 | 38.0 | 3.55e-01 | 100.0% | 62.7% |
| 3575366 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.51 | 37.0 | 3.65e-01 | 97.8% | 71.6% |
| 4994620 | 1.1.5.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD | 0.50 | 43.0 | 3.41e-01 | 100.0% | 80.0% |