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OQ709203.1__WGH20342.1__SEA_MAGUCO_50__00050

Bact-Vir

OQ709203.1__WGH20342.1__SEA_MAGUCO_50__00050

Identity

Accession:
OQ709203 ↗
Kingdom:
phage

Quality

67.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-162
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rylA00 3.40.1760.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family 0.80 49.0 3.42e-01 70.4% 21.0%
1mdyA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.76 54.0 4.96e-01 81.5% 58.8%
1v9mA03 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.76 46.0 3.70e-01 96.3% 34.4%
3ekiA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.74 64.0 4.53e-01 100.0% 70.5%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 47.0 5.05e-01 72.2% 76.6%
1nlwD00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.71 55.0 4.89e-01 85.2% 58.4%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 50.0 4.61e-01 74.1% 59.7%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 51.0 4.40e-01 75.9% 55.7%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.70 51.0 4.68e-01 75.9% 60.3%
3lqhA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.69 55.0 4.43e-01 88.9% 92.5%
2zb9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 45.0 4.70e-01 74.1% 76.0%
5gp9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 42.0 4.41e-01 74.1% 72.9%
3cdlB02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 50.0 3.77e-01 100.0% 33.8%
3qwlA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.62 52.0 4.01e-01 100.0% 91.9%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.60 50.0 4.19e-01 96.3% 57.7%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 46.0 3.61e-01 87.0% 40.0%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 45.0 4.12e-01 83.3% 83.1%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.57 51.0 4.33e-01 96.3% 80.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.56 47.0 3.83e-01 92.6% 50.0%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.56 49.0 4.07e-01 94.4% 64.8%
6qdjA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 37.0 3.34e-01 77.8% 86.8%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.51 42.0 3.20e-01 100.0% 40.8%
3d0cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 42.0 2.69e-01 98.1% 39.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4419521 243.1.1.108 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_YvbJ 0.78 48.0 3.52e-01 83.3% 25.2%
3415935 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.77 37.0 4.02e-01 92.6% 55.6%
3743346 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 57.0 3.39e-01 90.7% 13.0%
3417139 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.70 59.0 5.05e-01 98.1% 58.8%
3510680 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.70 50.0 4.52e-01 74.1% 82.9%
3525185 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.69 52.0 3.84e-01 85.2% 33.1%
3804939 192.2.1.3 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook 0.68 55.0 3.99e-01 87.0% 92.1%
1145753 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.68 51.0 4.51e-01 90.7% 57.3%
3218744 148.1.1.10 alpha arrays › Histone-like › Histone-related › Histone › TAFII28 0.66 53.0 4.28e-01 96.3% 44.2%
4961745 7516.1.1.79 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 0.61 51.0 3.09e-01 98.1% 13.4%
3488181 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.61 51.0 3.78e-01 98.1% 38.4%
337839 191.1.1.11 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 0.59 40.0 3.04e-01 70.4% 88.2%
4947665 223.2.1.58 a+b three layers › Profilin-like › profilin-like › profilin-like › Arf 0.58 48.0 3.72e-01 90.7% 81.7%
4996581 101.1.2.750 alpha arrays › HTH › HTH › winged helix domain › PF27374 0.55 42.0 3.49e-01 94.4% 43.5%
4541653 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.55 50.0 4.11e-01 100.0% 61.1%
2992377 566.2.1.1 alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.53 46.0 2.77e-01 96.3% 42.8%
D2 medium residues 19-103
PDB
D3 medium residues 168-233
PDB
D4 medium residues 234-303
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.66 44.0 4.74e-01 74.3% 84.2%
3lzkB00 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.63 53.0 3.51e-01 100.0% 59.9%
2dkhA03 3.40.30.20 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Phenol hydroxylase, C-terminal dimerisation domain 0.62 41.0 3.00e-01 70.0% 66.7%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 49.0 4.15e-01 90.0% 51.2%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.59 38.0 3.51e-01 100.0% 49.5%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 36.0 3.15e-01 72.9% 37.7%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.59 48.0 3.91e-01 92.9% 97.9%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 52.0 4.18e-01 100.0% 79.1%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 48.0 4.02e-01 100.0% 97.8%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 51.0 4.17e-01 100.0% 77.8%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 51.0 4.44e-01 100.0% 77.7%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.29e-01 100.0% 75.7%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.24e-01 100.0% 80.0%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 49.0 4.03e-01 100.0% 66.9%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 3.78e-01 91.4% 59.5%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 44.0 3.64e-01 95.7% 95.1%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.02e-01 98.6% 77.3%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 3.67e-01 82.9% 62.2%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.18e-01 98.6% 78.0%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.19e-01 98.6% 89.1%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.53 41.0 3.85e-01 87.1% 75.0%
3ndaA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 39.0 3.30e-01 85.7% 89.4%
4zk3A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 39.0 3.30e-01 85.7% 92.1%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.49e-01 100.0% 56.8%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.66e-01 98.6% 84.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3788142 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.70 45.0 3.74e-01 72.9% 38.3%
4011997 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 46.0 3.47e-01 72.9% 57.1%
3503446 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 54.0 4.12e-01 98.6% 62.3%
3935486 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 54.0 4.53e-01 100.0% 77.6%
3570680 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 54.0 3.42e-01 100.0% 23.1%
3801400 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 53.0 3.60e-01 100.0% 33.8%
5061930 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 41.0 3.73e-01 72.9% 50.5%
3931993 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.53e-01 100.0% 85.0%
3222552 2485.1.1.90 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredox_PDIA6_C 0.61 50.0 4.10e-01 92.9% 80.7%
3546981 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.60 41.0 3.35e-01 71.4% 44.3%
4195041 4090.1.1.1 a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like 0.60 41.0 3.27e-01 71.4% 74.7%
3511457 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 4.13e-01 100.0% 72.6%
3859895 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.58 39.0 2.48e-01 71.4% 13.1%
3254167 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 52.0 3.33e-01 100.0% 25.4%
3492069 4292.2.1.2 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.58 44.0 3.94e-01 85.7% 81.9%
3592501 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.07e-01 100.0% 65.7%
3757091 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 49.0 4.04e-01 98.6% 72.3%
3995979 220.1.1.34 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.57 50.0 4.11e-01 100.0% 65.4%
3562938 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 50.0 4.13e-01 100.0% 68.8%
3502952 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.56 42.0 3.80e-01 82.9% 70.0%
3609866 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 47.0 3.64e-01 100.0% 76.6%
3177027 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 49.0 3.67e-01 100.0% 57.7%
3471154 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 49.0 4.10e-01 100.0% 81.7%
3936037 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 4.45e-01 100.0% 87.8%
3927894 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 40.0 3.40e-01 85.7% 82.2%
3861070 4292.2.1.2 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.54 40.0 3.62e-01 85.7% 77.3%
3244890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 3.99e-01 100.0% 66.7%
3544618 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.53 39.0 3.77e-01 82.9% 81.2%
3998992 220.1.1.79 beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.53 47.0 3.82e-01 100.0% 78.5%
3921576 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 47.0 3.79e-01 100.0% 63.6%
4396772 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 40.0 3.30e-01 87.1% 75.3%
3214387 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 48.0 4.38e-01 100.0% 84.4%
3853402 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.77e-01 97.1% 76.0%
4929971 274.1.1.66 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7266 0.52 33.0 2.80e-01 71.4% 36.0%
3554073 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 39.0 3.34e-01 85.7% 83.1%
3586428 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.52 35.0 3.09e-01 70.0% 81.7%
3738467 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 38.0 3.21e-01 84.3% 77.9%
3563663 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.51 43.0 3.96e-01 100.0% 83.0%
3756160 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.51 43.0 3.53e-01 100.0% 57.2%
4112170 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 45.0 3.60e-01 98.6% 65.0%
3411538 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.51 44.0 3.38e-01 98.6% 60.6%
3920536 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 45.0 3.47e-01 100.0% 54.4%
4241417 219.1.1.21 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.51 42.0 3.02e-01 97.1% 68.9%