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OQ709204.1__WGH20362.1__SEA_BABYLAND_8__00008

Bact-Vir

OQ709204.1__WGH20362.1__SEA_BABYLAND_8__00008

Identity

Accession:
OQ709204 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bixzunavirus› Mycobacterium_phage_Babyland

TaxID: 3038373

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-103
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.64 38.0 4.28e-01 76.7% 78.2%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 34.0 3.26e-01 80.8% 45.3%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.60 35.0 3.52e-01 79.5% 56.9%
2jz6A01 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.58 32.0 3.60e-01 82.2% 74.0%
2vvlA02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.57 42.0 3.04e-01 79.5% 71.2%
2napA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 42.0 2.79e-01 79.5% 64.7%
2iv2X02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 41.0 2.79e-01 79.5% 68.7%
1e29A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.52 39.0 3.20e-01 79.5% 90.4%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 33.0 3.58e-01 79.5% 78.7%
2k5cA00 3.10.20.830 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bifunctional heparan sulphate n-deacetylase/n-sulphotransferase 0.52 37.0 3.50e-01 75.3% 100.0%
4ljiB00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.51 37.0 3.16e-01 79.5% 85.5%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 38.0 3.15e-01 79.5% 73.6%
1qduB00 3.30.70.1470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like 0.51 37.0 3.52e-01 78.1% 83.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 38.0 2.90e-01 79.5% 47.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027310 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.66 36.0 2.99e-01 83.6% 30.0%
3397134 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.65 36.0 4.21e-01 80.8% 78.0%
3415578 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 37.0 4.13e-01 82.2% 82.0%
4488198 7555.1.1.0 ↗ a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related 0.62 50.0 3.48e-01 89.0% 79.6%
3483303 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 45.0 4.72e-01 100.0% 90.8%
3797988 376.1.1.43 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C 0.60 40.0 3.33e-01 86.3% 37.8%
3412052 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.59 36.0 3.93e-01 84.9% 75.0%
3706822 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 33.0 3.70e-01 86.3% 74.5%
3300493 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.58 44.0 3.24e-01 80.8% 76.1%
4443055 2003.2.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.57 43.0 2.77e-01 79.5% 57.6%
3722264 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 40.0 2.69e-01 72.6% 57.0%
4505111 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 39.0 4.40e-01 80.8% 96.4%
3260247 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.56 41.0 3.96e-01 76.7% 90.4%
3587273 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 37.0 4.01e-01 75.3% 85.0%
3202350 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.55 43.0 4.04e-01 86.3% 68.9%
5008360 2003.2.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.55 40.0 2.52e-01 78.1% 55.9%
3336399 386.1.1.63 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_3rep 0.55 33.0 3.44e-01 80.8% 64.6%
3268075 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 42.0 4.09e-01 86.3% 77.5%
3760738 4357.1.1.9 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE, WWE_3 0.53 39.0 3.23e-01 80.8% 55.0%
3029343 107.1.1.0 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c 0.53 39.0 3.26e-01 79.5% 89.1%
3539015 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.52 37.0 3.23e-01 78.1% 57.3%