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OQ709208.1__WGH20793.1__X__00010

Bact-Vir

OQ709208.1__WGH20793.1__X__00010

Identity

Accession:
OQ709208 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Commandariavirus› Gordonia_phage_Commandaria

TaxID: 3038364

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-83
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24203.2 best Phage_ProQ_C_like 37.6 4.40e-09 97.3% 35.7%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.77 44.0 5.34e-01 83.8% 91.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 47.0 5.29e-01 100.0% 84.2%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.66 50.0 4.57e-01 97.3% 61.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 4.60e-01 100.0% 84.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 41.0 4.27e-01 100.0% 77.6%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 41.0 3.66e-01 100.0% 50.0%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 37.0 3.97e-01 94.6% 73.8%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.57 42.0 3.76e-01 100.0% 55.0%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.56 47.0 4.22e-01 100.0% 66.0%
1ia9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 47.0 3.89e-01 100.0% 88.3%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 39.0 2.63e-01 78.4% 74.1%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.54 40.0 2.74e-01 78.4% 82.5%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 46.0 3.42e-01 94.6% 87.8%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 45.0 3.23e-01 94.6% 71.2%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.69e-01 90.5% 20.2%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 41.0 3.06e-01 85.1% 63.3%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 39.0 4.12e-01 100.0% 86.8%
2x32A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 44.0 3.52e-01 100.0% 94.3%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 44.0 3.54e-01 100.0% 96.4%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.11e-01 90.5% 66.3%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 4.18e-01 91.9% 84.3%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.55e-01 85.1% 85.7%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.51 35.0 2.80e-01 70.3% 76.5%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 42.0 3.30e-01 94.6% 94.9%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 37.0 2.40e-01 79.7% 67.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3220929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.74e-01 100.0% 69.3%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.74e-01 100.0% 77.8%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.12e-01 100.0% 57.6%
4400596 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.66 50.0 3.95e-01 100.0% 38.1%
1833882 9.4.1.3 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.66 50.0 4.69e-01 97.3% 65.6%
3276050 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 50.0 3.47e-01 82.4% 39.8%
3701817 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 49.0 3.30e-01 82.4% 35.4%
3597372 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 49.0 3.27e-01 82.4% 35.8%
4668960 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.27e-01 100.0% 55.5%
5016488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 5.26e-01 100.0% 100.0%
3702171 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.14e-01 100.0% 55.8%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.31e-01 100.0% 64.2%
3785573 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 41.0 3.51e-01 100.0% 43.3%
3171956 9.1.1.45 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C 0.60 53.0 4.24e-01 100.0% 94.0%
3252765 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.60 45.0 3.69e-01 89.2% 44.4%
3588663 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.59 49.0 4.61e-01 100.0% 74.7%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.70e-01 100.0% 85.3%
3578613 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.58 48.0 3.81e-01 100.0% 96.6%
3967232 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.57 49.0 4.17e-01 100.0% 58.3%
3406725 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.56 46.0 3.20e-01 93.2% 90.4%
4026222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 3.93e-01 100.0% 65.5%
3170723 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.55 47.0 4.18e-01 100.0% 69.6%
3907221 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.54 42.0 3.09e-01 85.1% 62.4%
3798317 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 37.0 2.76e-01 71.6% 56.5%
3380131 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 44.0 2.90e-01 90.5% 26.3%
3411079 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.54 47.0 3.58e-01 100.0% 73.3%
3636066 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.53 47.0 3.70e-01 100.0% 75.0%
3364229 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 44.0 2.85e-01 90.5% 24.0%
3429047 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.51 39.0 2.72e-01 87.8% 96.3%
D2 medium residues 93-129
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5nj8A01 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.71 53.0 4.85e-01 100.0% 61.5%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.69 46.0 3.31e-01 78.4% 25.7%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.67 49.0 4.14e-01 83.8% 47.8%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 49.0 3.81e-01 83.8% 37.0%
1h1oA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.63 50.0 4.06e-01 91.9% 56.0%
1fcdC01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.59 47.0 3.77e-01 91.9% 48.7%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.57 40.0 3.04e-01 75.7% 30.4%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.57 48.0 3.55e-01 100.0% 63.1%
1ss3A00 1.10.287.720 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pollen allergen ole e 6 0.55 38.0 3.58e-01 75.7% 58.0%
5jtfB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 2.84e-01 100.0% 67.4%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 2.70e-01 78.4% 73.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928759 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 75.0 6.99e-01 100.0% 82.2%
3252120 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.80 63.0 5.15e-01 100.0% 46.7%
4993602 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.67 56.0 4.83e-01 100.0% 81.0%
4861703 107.1.1.9 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrome_CBB3 0.60 45.0 3.63e-01 91.9% 40.3%
3409966 2007.2.3.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Myotub-related 0.56 39.0 2.26e-01 73.0% 29.9%