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OQ709208.1__WGH20872.1__X__00089

Bact-Vir

OQ709208.1__WGH20872.1__X__00089

Identity

Accession:
OQ709208 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Commandariavirus› Gordonia_phage_Commandaria

TaxID: 3038364

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-63
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.75 47.0 3.88e-01 77.6% 36.9%
4axhA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.74 43.0 3.15e-01 75.5% 22.7%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.72 44.0 4.13e-01 100.0% 50.8%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 49.0 4.08e-01 89.8% 42.7%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.69 43.0 3.31e-01 79.6% 29.2%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 43.0 4.16e-01 77.6% 55.4%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 43.0 3.44e-01 79.6% 33.0%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 42.0 3.29e-01 77.6% 30.4%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.64 45.0 4.00e-01 75.5% 95.9%
3sjnA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 49.0 3.65e-01 83.7% 37.0%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 40.0 2.78e-01 75.5% 20.8%
4twlA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.62 52.0 3.40e-01 100.0% 21.3%
4ph8A00 2.60.40.2910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 49.0 3.42e-01 85.7% 92.7%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 2.86e-01 77.6% 17.1%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 43.0 3.37e-01 79.6% 66.9%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.60 40.0 3.23e-01 79.6% 35.9%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 3.97e-01 100.0% 54.5%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.00e-01 98.0% 94.2%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 4.08e-01 95.9% 93.5%
1vcaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.11e-01 95.9% 94.4%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.31e-01 95.9% 73.6%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 3.92e-01 98.0% 91.7%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.05e-01 95.9% 96.7%
1w8oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 3.76e-01 91.8% 92.2%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 52.0 4.00e-01 100.0% 75.5%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.57 39.0 3.35e-01 71.4% 88.4%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.57 46.0 3.82e-01 100.0% 59.6%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.57 37.0 3.65e-01 100.0% 59.3%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.56 44.0 3.63e-01 91.8% 97.0%
3t2lA02 2.60.40.2630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 3.47e-01 100.0% 70.5%
3w5nA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 49.0 3.35e-01 98.0% 53.3%
2hp0A02 3.30.1330.120 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-methylcitrate dehydratase PrpD 0.55 47.0 3.46e-01 95.9% 83.2%
6lebA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 49.0 3.53e-01 100.0% 84.2%
1tcvA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 44.0 2.81e-01 95.9% 16.6%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.54 48.0 3.61e-01 100.0% 76.7%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.54 47.0 3.63e-01 100.0% 58.4%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.54 46.0 3.69e-01 100.0% 50.0%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.54 40.0 3.62e-01 100.0% 56.6%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.53 44.0 3.44e-01 100.0% 42.2%
2r7cA02 3.30.428.20 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain 0.53 39.0 2.77e-01 79.6% 43.9%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.53 43.0 2.95e-01 89.8% 84.9%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.53 39.0 3.29e-01 100.0% 42.6%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.53 38.0 3.13e-01 77.6% 74.2%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.52 37.0 2.47e-01 100.0% 18.8%
2gumB01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.49e-01 100.0% 72.0%
1iamA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.81e-01 100.0% 68.7%
6p3qA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 41.0 3.06e-01 100.0% 62.7%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.51 46.0 3.98e-01 100.0% 70.3%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 2.97e-01 91.8% 64.8%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 41.0 2.85e-01 100.0% 72.1%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5035882 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.74 54.0 3.37e-01 77.6% 95.7%
3511262 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 50.0 4.20e-01 77.6% 100.0%
3610080 319.1.1.20 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SF3A2 0.67 55.0 4.11e-01 91.8% 58.1%
4401156 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.67 47.0 3.21e-01 75.5% 97.8%
3691144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 58.0 5.20e-01 98.0% 82.9%
3723834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.19e-01 98.0% 82.9%
3598074 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 48.0 3.73e-01 77.6% 72.4%
5079018 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 56.0 4.79e-01 100.0% 77.6%
3594933 319.2.1.1 ↗ beta sandwiches › HSP20-like › Pre-mRNA-splicing factor PRP11 C-terminal domain › Pre-mRNA-splicing factor PRP11 C-terminal domain › SF3A2 0.66 53.0 4.01e-01 91.8% 58.1%
3380327 5.1.10.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › WD40_RFWD3 0.66 58.0 4.59e-01 100.0% 61.0%
3351841 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.64 57.0 4.18e-01 100.0% 45.7%
4380028 220.1.1.291 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_4 0.64 55.0 4.79e-01 100.0% 71.2%
3628669 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 50.0 4.56e-01 85.7% 67.7%
3411359 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 48.0 3.61e-01 100.0% 32.8%
143776 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.63 49.0 3.58e-01 83.7% 34.4%
3409335 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.63 55.0 3.63e-01 98.0% 36.9%
4017219 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 54.0 3.10e-01 100.0% 15.5%
3995204 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.63 49.0 4.48e-01 85.7% 67.7%
1144815 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.62 54.0 4.60e-01 98.0% 75.0%
3560459 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.62 41.0 4.28e-01 77.6% 75.6%
4302934 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.62 46.0 3.02e-01 79.6% 93.3%
3937517 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 55.0 2.96e-01 100.0% 8.1%
4587218 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.60 46.0 3.45e-01 83.7% 34.1%
3303112 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 53.0 4.07e-01 100.0% 62.7%
5057515 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 45.0 4.20e-01 79.6% 68.3%
3642679 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.60 51.0 4.03e-01 100.0% 50.0%
5005914 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.60 40.0 3.30e-01 100.0% 38.8%
3244602 11.1.1.889 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26428 0.60 52.0 4.43e-01 98.0% 80.0%
5070519 2011.1.1.18 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › AstE_AspA_cat 0.59 43.0 2.69e-01 77.6% 29.8%
3598127 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 3.00e-01 100.0% 14.6%
None — 0.58 52.0 3.14e-01 100.0% 15.9%
3958613 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.58 47.0 3.61e-01 95.9% 40.0%
4266048 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.57 47.0 3.75e-01 95.9% 98.1%
3717251 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.72e-01 98.0% 92.7%
5034252 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 45.0 3.35e-01 100.0% 33.8%
4974435 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 46.0 3.76e-01 95.9% 56.8%
3598090 884.1.1.0 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.55 39.0 3.01e-01 77.6% 34.8%
4883912 4028.1.1.1 ↗ beta barrels › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Catalase 0.55 47.0 3.78e-01 100.0% 65.3%
5011932 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.55 42.0 3.38e-01 100.0% 41.0%
3936760 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.55 38.0 3.27e-01 77.6% 48.9%
3655399 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 47.0 3.52e-01 100.0% 61.6%
5045089 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.54 45.0 3.61e-01 100.0% 47.0%
3999188 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.54 38.0 3.83e-01 75.5% 76.0%
3931897 69.1.2.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH 0.53 41.0 3.15e-01 87.8% 38.4%
3606766 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 47.0 3.21e-01 100.0% 28.1%
4125419 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 42.0 3.15e-01 91.8% 76.9%
3201954 4096.1.1.0 ↗ a+b two layers › NAP-like › NAP-like › NAP-like 0.52 45.0 2.87e-01 100.0% 21.5%
3934686 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 44.0 3.54e-01 100.0% 49.5%
5075874 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 44.0 3.06e-01 100.0% 30.3%
4960870 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 39.0 3.37e-01 95.9% 50.6%
3657300 4.1.1.190 ↗ beta barrels › SH3 › SH3 › SH3 › Transposase_23 0.51 38.0 3.53e-01 98.0% 88.7%
4012850 7520.1.1.0 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.50 46.0 3.07e-01 100.0% 73.7%
3635255 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.50 43.0 2.91e-01 100.0% 86.7%