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OQ709216.1__WGH21411.1__SEA_EMOTION_62__00062

Bact-Vir

OQ709216.1__WGH21411.1__SEA_EMOTION_62__00062

Identity

Accession:
OQ709216 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-61
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 54.0 4.31e-01 100.0% 40.7%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.69 60.0 5.08e-01 100.0% 95.2%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.68 59.0 4.13e-01 100.0% 35.9%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.67 54.0 5.02e-01 100.0% 69.7%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 50.0 4.02e-01 100.0% 39.6%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 48.0 3.44e-01 81.6% 34.4%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 55.0 4.03e-01 100.0% 35.4%
3bpnC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.73e-01 100.0% 39.8%
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 46.0 3.88e-01 100.0% 43.2%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 50.0 4.17e-01 100.0% 48.0%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 51.0 4.19e-01 100.0% 47.9%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.63 50.0 4.50e-01 100.0% 98.7%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 52.0 4.34e-01 100.0% 92.6%
3qhyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 44.0 2.85e-01 77.6% 20.5%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 50.0 4.25e-01 100.0% 66.3%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 51.0 3.91e-01 100.0% 39.3%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.08e-01 100.0% 46.7%
3qt2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.27e-01 100.0% 53.1%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 53.0 3.29e-01 100.0% 23.7%
2jqzA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 52.0 3.89e-01 100.0% 37.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 48.0 3.53e-01 100.0% 89.8%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 53.0 3.14e-01 100.0% 17.6%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 41.0 2.59e-01 73.5% 89.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 47.0 4.09e-01 100.0% 57.6%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.59 49.0 3.55e-01 100.0% 31.6%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 51.0 4.77e-01 100.0% 85.2%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 3.73e-01 100.0% 41.1%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.57 48.0 4.86e-01 100.0% 98.0%
2hvzA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 44.0 4.06e-01 93.9% 100.0%
3psfA03 1.10.3500.10 Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like 0.57 47.0 2.96e-01 100.0% 19.9%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 45.0 4.10e-01 100.0% 73.7%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 49.0 3.04e-01 100.0% 25.0%
4cvuA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.17e-01 100.0% 60.8%
5ce8A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.55 41.0 3.23e-01 83.7% 80.5%
7neaA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.55 40.0 3.21e-01 83.7% 82.6%
2re9A01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.30e-01 100.0% 67.5%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.55 48.0 4.48e-01 100.0% 95.2%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 45.0 4.40e-01 100.0% 98.2%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.55 44.0 3.47e-01 100.0% 41.8%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 39.0 3.01e-01 85.7% 74.3%
3ue3A02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 38.0 2.94e-01 83.7% 50.0%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 48.0 3.70e-01 100.0% 94.3%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.52 38.0 2.93e-01 98.0% 29.1%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.52 43.0 3.51e-01 100.0% 51.5%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.52 41.0 3.54e-01 100.0% 57.4%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 40.0 4.09e-01 100.0% 95.9%
7eehA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 46.0 2.89e-01 100.0% 28.5%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.51 44.0 3.36e-01 100.0% 45.9%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 34.0 3.01e-01 100.0% 40.7%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 40.0 2.68e-01 98.0% 20.5%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 40.0 3.21e-01 100.0% 48.3%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3760983 3335.1.1.3 beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › KCTD18_C 0.76 65.0 5.21e-01 100.0% 99.0%
5065393 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.72 60.0 4.85e-01 100.0% 73.8%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.69 58.0 5.15e-01 100.0% 97.3%
3999276 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.68 61.0 4.07e-01 100.0% 26.5%
3933905 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.66 55.0 4.09e-01 100.0% 38.6%
3496147 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 54.0 4.37e-01 98.0% 72.0%
3404684 10.12.1.84 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.64 55.0 3.69e-01 100.0% 30.5%
4252321 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 55.0 4.40e-01 100.0% 53.3%
3551231 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.63 52.0 4.12e-01 100.0% 43.8%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 51.0 5.12e-01 98.0% 100.0%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.63 50.0 3.79e-01 100.0% 35.9%
3611587 4342.1.1.0 alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like 0.63 55.0 3.60e-01 100.0% 22.7%
3798349 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 47.0 4.03e-01 100.0% 48.2%
4567075 10.12.1.84 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.63 52.0 3.31e-01 100.0% 22.1%
5079907 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.63 48.0 2.72e-01 87.8% 53.2%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 48.0 4.88e-01 100.0% 94.0%
3911249 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.62 46.0 3.79e-01 100.0% 42.1%
3482279 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 54.0 3.60e-01 100.0% 52.5%
3494162 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 52.0 4.07e-01 100.0% 50.4%
3743702 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 42.0 3.36e-01 71.4% 96.2%
4970537 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 45.0 4.87e-01 95.9% 97.5%
3935405 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 49.0 4.15e-01 100.0% 51.1%
4968580 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 54.0 4.89e-01 98.0% 73.8%
3929359 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 48.0 3.99e-01 100.0% 75.2%
5046576 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 45.0 3.11e-01 79.6% 56.5%
3397959 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 51.0 3.92e-01 100.0% 40.0%
3575366 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.61 44.0 3.71e-01 100.0% 42.1%
4161260 7056.1.1.3 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.61 47.0 4.84e-01 100.0% 93.3%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.60 46.0 4.68e-01 100.0% 95.6%
3392943 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 51.0 3.74e-01 100.0% 39.3%
4507405 375.1.1.128 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.59 46.0 4.77e-01 100.0% 95.6%
5071371 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 4.06e-01 100.0% 47.6%
3472406 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.59 51.0 3.16e-01 100.0% 18.3%
4568770 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.59 46.0 4.12e-01 100.0% 76.5%
4944359 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.59 47.0 4.13e-01 100.0% 76.5%
4968520 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 44.0 3.55e-01 85.7% 90.0%
4945301 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.35e-01 91.8% 53.3%
4189709 288.1.1.1 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.58 48.0 3.18e-01 100.0% 21.7%
4000362 223.2.1.36 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.58 44.0 3.54e-01 83.7% 45.7%
3935404 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.58 51.0 4.16e-01 98.0% 54.4%
3613878 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 50.0 3.19e-01 100.0% 32.5%
4316258 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 45.0 4.00e-01 100.0% 81.2%
3445562 10.32.1.212 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.56 46.0 3.24e-01 100.0% 32.4%
4943252 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.56 44.0 3.38e-01 100.0% 35.2%
3574971 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 48.0 4.78e-01 100.0% 98.0%
2640865 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 45.0 4.45e-01 100.0% 98.2%
3501051 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.54 45.0 3.54e-01 98.0% 41.7%
4968352 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.54 45.0 3.91e-01 100.0% 88.2%
5027281 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 3.88e-01 100.0% 70.7%
3599827 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.21e-01 100.0% 37.1%
3603767 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.54 45.0 3.67e-01 100.0% 72.4%
3179826 11.1.1.642 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.54 45.0 3.48e-01 100.0% 49.6%
3390562 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 41.0 3.88e-01 98.0% 68.6%
3475200 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.51 42.0 3.17e-01 93.9% 57.7%
3742175 221.1.1.93 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.51 41.0 3.28e-01 95.9% 70.9%
3962499 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.74e-01 100.0% 68.0%
3216812 382.1.1.20 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 0.51 44.0 3.73e-01 100.0% 89.4%
3507692 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 41.0 3.06e-01 100.0% 48.0%
3783266 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.50 42.0 3.15e-01 93.9% 61.6%