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OQ709222.1__WGH21970.1__SEA_TROGGLEHUMPER_89__00089

Bact-Vir

OQ709222.1__WGH21970.1__SEA_TROGGLEHUMPER_89__00089

Identity

Accession:
OQ709222 ↗
Kingdom:
phage

Quality

61.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trogglehumpervirus› Rhodococcus_phage_Trogglehumper

TaxID: 3038381

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-80
PDB
Domain cluster: rep: NC_054723.1__YP_010058804.1__KHQ83_gp015__00015__D48-103
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.66 50.0 3.58e-01 84.2% 89.9%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 45.0 2.90e-01 75.4% 76.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 3.96e-01 71.9% 90.7%
3m7aA01 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.60 40.0 3.14e-01 70.2% 45.6%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.59 43.0 3.71e-01 80.7% 71.7%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.58e-01 75.4% 89.2%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.59 48.0 3.67e-01 91.2% 75.7%
3md7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 48.0 3.13e-01 94.7% 41.5%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.58 41.0 3.40e-01 77.2% 55.9%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 39.0 3.26e-01 70.2% 66.0%
1na8B00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.58 43.0 3.33e-01 84.2% 93.1%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 38.0 3.11e-01 70.2% 59.5%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 3.00e-01 91.2% 34.7%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 41.0 3.73e-01 77.2% 73.3%
4ifdI01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.63e-01 78.9% 65.1%
1f20A02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.56 38.0 2.86e-01 71.9% 93.7%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 42.0 3.61e-01 86.0% 59.0%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 37.0 3.99e-01 70.2% 91.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 36.0 3.70e-01 70.2% 69.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 43.0 3.36e-01 91.2% 72.9%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.53 34.0 3.19e-01 70.2% 48.1%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 40.0 3.19e-01 87.7% 84.5%
5gvcB01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 2.71e-01 73.7% 33.1%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 41.0 3.52e-01 89.5% 61.0%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.04e-01 75.4% 79.6%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 35.0 2.54e-01 71.9% 75.9%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.21e-01 91.2% 55.0%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 35.0 2.79e-01 71.9% 67.9%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.52 38.0 3.22e-01 78.9% 94.9%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.51 39.0 3.51e-01 87.7% 79.3%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.50 33.0 3.52e-01 77.2% 90.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742185 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.69 47.0 2.81e-01 70.2% 57.2%
3932147 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.64 48.0 3.51e-01 80.7% 42.5%
591 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.63 43.0 3.95e-01 71.9% 89.5%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.61 47.0 4.79e-01 84.2% 90.9%
4991056 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.58 44.0 4.55e-01 86.0% 92.7%
4503580 1.1.7.83 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C 0.58 41.0 3.67e-01 75.4% 68.8%
3927894 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 38.0 2.98e-01 70.2% 43.7%
4023312 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 38.0 3.07e-01 70.2% 68.8%
4970135 1.1.7.83 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C 0.56 40.0 3.51e-01 75.4% 64.7%
3100772 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.56 41.0 3.71e-01 82.5% 59.3%
5069323 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.45e-01 84.2% 98.0%
3906671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 36.0 4.02e-01 70.2% 95.0%
3426456 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.55 43.0 3.20e-01 89.5% 48.8%
3515029 223.2.1.46 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.54 46.0 3.50e-01 100.0% 57.3%
4399650 223.1.1.59 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.54 41.0 2.99e-01 84.2% 34.9%
4961746 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.54 36.0 2.98e-01 70.2% 36.5%
3926546 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.54 36.0 2.67e-01 71.9% 31.8%
3232235 390.1.1.7 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.54 39.0 3.32e-01 86.0% 64.3%
3791839 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 37.0 3.42e-01 75.4% 60.0%
5029687 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 4.04e-01 75.4% 97.8%
3509056 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.53 42.0 3.49e-01 98.2% 95.2%
4528518 11.8.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like › Nakanori 0.53 40.0 2.99e-01 87.7% 78.2%
3430829 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 41.0 3.20e-01 91.2% 56.4%
4959998 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 35.0 2.96e-01 70.2% 41.0%
3667522 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.52 41.0 3.05e-01 94.7% 81.1%
3728137 2003.1.3.35 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like, DAO 0.52 37.0 2.22e-01 78.9% 24.4%
4191473 223.1.1.59 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.52 39.0 3.23e-01 86.0% 53.0%
3873622 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 38.0 2.66e-01 82.5% 68.6%
3574976 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 34.0 3.52e-01 71.9% 90.9%
4100169 223.1.1.155 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PHY, PAS, GAF, PAS_2 0.51 42.0 2.42e-01 100.0% 13.6%
3651713 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.51 42.0 3.13e-01 100.0% 54.3%
4964830 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 41.0 3.58e-01 100.0% 86.0%
3715477 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.51 37.0 2.88e-01 78.9% 60.7%
3970193 319.3.1.0 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.50 37.0 3.26e-01 84.2% 96.8%