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OQ716682.1__WKV23787.1__X__00033
Bact-VirOQ716682.1__WKV23787.1__X__00033
Identity
- Accession:
- OQ716682 ↗
- Kingdom:
- phage
Quality
89.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-54
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.89 | 82.0 | 7.19e-01 | 100.0% | 82.2% |
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.88 | 76.0 | 7.09e-01 | 100.0% | 77.4% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.88 | 82.0 | 6.83e-01 | 100.0% | 77.1% |
| 3pyoY00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.87 | 65.0 | 6.11e-01 | 100.0% | 66.1% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.87 | 78.0 | 6.68e-01 | 98.1% | 77.5% |
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 72.0 | 6.41e-01 | 90.4% | 72.9% |
| 2yo2A01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.82 | 55.0 | 5.64e-01 | 94.2% | 72.5% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.81 | 70.0 | 5.53e-01 | 100.0% | 47.6% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 67.0 | 5.36e-01 | 100.0% | 48.5% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.78 | 68.0 | 6.07e-01 | 100.0% | 69.9% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.77 | 68.0 | 6.24e-01 | 100.0% | 77.9% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.77 | 66.0 | 4.78e-01 | 96.2% | 41.8% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.76 | 67.0 | 5.96e-01 | 100.0% | 85.3% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 64.0 | 6.10e-01 | 100.0% | 98.4% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 58.0 | 5.85e-01 | 88.5% | 90.2% |
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 62.0 | 5.08e-01 | 96.2% | 54.1% |
| 4byfC01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.73 | 66.0 | 5.43e-01 | 98.1% | 96.6% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.72 | 57.0 | 4.17e-01 | 84.6% | 46.9% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 58.0 | 5.07e-01 | 100.0% | 57.8% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.71 | 59.0 | 5.38e-01 | 100.0% | 68.4% |
| 3oqlC00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.71 | 61.0 | 3.92e-01 | 100.0% | 20.7% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 59.0 | 4.71e-01 | 100.0% | 46.5% |
| 2i06A02 | 3.30.54.10 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.70 | 54.0 | 4.72e-01 | 84.6% | 55.8% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 57.0 | 5.20e-01 | 100.0% | 88.3% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.69 | 57.0 | 4.94e-01 | 100.0% | 94.4% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 58.0 | 5.48e-01 | 100.0% | 87.5% |
| 4gzcA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 42.0 | 3.10e-01 | 76.9% | 25.8% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.66 | 55.0 | 4.03e-01 | 100.0% | 54.9% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 54.0 | 5.27e-01 | 98.1% | 86.2% |
| 1f0jA00 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.63 | 57.0 | 3.39e-01 | 100.0% | 86.6% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.62 | 48.0 | 4.75e-01 | 94.2% | 81.4% |
| 1bgpA01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.61 | 46.0 | 3.27e-01 | 82.7% | 48.4% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 46.0 | 4.36e-01 | 88.5% | 87.7% |
| 4rhiA00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.57 | 47.0 | 2.94e-01 | 96.2% | 50.3% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 3.50e-01 | 78.8% | 72.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3349325 | 5086.1.1.135 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF7615 | 0.92 | 75.0 | 6.36e-01 | 100.0% | 56.2% |
| 3810801 | 632.22.1.139 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › KIF21A_4th | 0.89 | 84.0 | 5.79e-01 | 100.0% | 34.7% |
| 3319168 | 3922.1.1.163 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Not3 | 0.88 | 80.0 | 5.86e-01 | 100.0% | 40.0% |
| 5035759 | 605.1.1.306 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF30649 | 0.86 | 79.0 | 7.26e-01 | 100.0% | 86.2% |
| 3361553 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.86 | 72.0 | 6.02e-01 | 98.1% | 55.3% |
| 4025828 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.83 | 65.0 | 6.97e-01 | 84.6% | 97.8% |
| 4443150 | 192.15.1.73 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › GrpE | 0.81 | 75.0 | 5.35e-01 | 100.0% | 39.3% |
| 4301189 | 3812.1.1.4 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › GrpE | 0.79 | 72.0 | 6.86e-01 | 100.0% | 93.3% |
| 5044480 | 7566.1.1.2 ↗ | a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N | 0.79 | 62.0 | 4.25e-01 | 100.0% | 25.0% |
| 2814626 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.78 | 63.0 | 3.92e-01 | 100.0% | 15.7% |
| 3642502 | 109.4.1.1171 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_PDR | 0.77 | 62.0 | 4.83e-01 | 94.2% | 41.8% |
| 4174058 | 3922.1.1.154 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › GrpE | 0.77 | 69.0 | 5.35e-01 | 100.0% | 47.3% |
| 4043979 | 3812.1.1.4 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › GrpE | 0.77 | 69.0 | 6.60e-01 | 100.0% | 86.7% |
| 3172862 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.76 | 67.0 | 4.24e-01 | 100.0% | 19.6% |
| 3705583 | 3928.1.1.0 ↗ | alpha bundles › Cell division protein CrgA › Cell division protein CrgA › Cell division protein CrgA | 0.74 | 66.0 | 6.01e-01 | 100.0% | 74.3% |
| 4984327 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.74 | 64.0 | 5.04e-01 | 96.2% | 77.1% |
| 7636 | 4053.1.1.1 ↗ | a+b complex topology › Insertion domain in replication terminator protein (Tus) › Insertion domain in replication terminator protein (Tus) › Insertion domain in replication terminator protein (Tus) › Ter | 0.73 | 57.0 | 5.33e-01 | 86.5% | 69.4% |
| 3297534 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.72 | 61.0 | 4.36e-01 | 100.0% | 32.1% |
| 3403744 | 109.4.1.3429 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28853, PF28855, PF28893 | 0.72 | 61.0 | 3.51e-01 | 100.0% | 10.5% |
| 3188860 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 61.0 | 4.16e-01 | 100.0% | 28.0% |
| 3962893 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.71 | 60.0 | 5.07e-01 | 100.0% | 55.8% |
| 3807825 | 6067.1.1.0 ↗ | alpha arrays › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 | 0.68 | 54.0 | 3.33e-01 | 86.5% | 32.4% |
| 3273667 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.66 | 60.0 | 3.65e-01 | 100.0% | 26.9% |
| 4127245 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.60 | 45.0 | 4.16e-01 | 94.2% | 63.1% |
| 4017831 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.60 | 49.0 | 3.55e-01 | 98.1% | 31.6% |