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OQ717002.1__WFS86115.1__X__00020

Bact-Vir

OQ717002.1__WFS86115.1__X__00020

Identity

Accession:
OQ717002 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Clostridium_phage_vB_CpeS-17DYC

TaxID: 3038269

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 78-149
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.85 63.0 4.21e-01 80.6% 23.0%
2h09A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.78 53.0 5.87e-01 75.0% 91.1%
5wpjB03 1.10.8.660 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.75 52.0 5.87e-01 81.9% 98.1%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 49.0 3.94e-01 73.6% 88.4%
1rajA01 4.10.880.10 Few Secondary Structures › Irregular › Poliovirus 3D polymerase; domain 1 (Nucleotidyltransferase) › Poliovirus 3D polymerase Domain 1 (Nucleotidyltransferase) 0.68 31.0 3.85e-01 83.3% 70.5%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.67 51.0 4.23e-01 81.9% 70.0%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 47.0 4.65e-01 79.2% 83.5%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 49.0 4.67e-01 84.7% 85.1%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 48.0 4.53e-01 86.1% 85.7%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.61 45.0 4.28e-01 80.6% 65.2%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.60 45.0 4.70e-01 81.9% 94.0%
3u2rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.29e-01 70.8% 85.2%
4rz7A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 47.0 4.01e-01 87.5% 99.2%
1mjtB01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.55 42.0 3.53e-01 84.7% 66.7%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.72e-01 75.0% 100.0%
6ui4A03 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 36.0 3.44e-01 73.6% 82.6%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.51 37.0 3.40e-01 77.8% 74.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997779 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.82 60.0 4.72e-01 80.6% 39.3%
4973231 304.48.1.20 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 0.82 61.0 4.09e-01 80.6% 23.3%
3333015 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.77 63.0 5.83e-01 87.5% 98.9%
3643079 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.75 57.0 5.80e-01 98.6% 82.9%
5079591 304.103.1.1 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.73 53.0 3.74e-01 75.0% 75.4%
4454257 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.71 51.0 5.38e-01 83.3% 84.6%
4324088 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.71 48.0 5.30e-01 79.2% 90.9%
3890174 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.70 50.0 4.53e-01 75.0% 76.8%
3993627 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 43.0 4.42e-01 76.4% 67.1%
5059586 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.64 49.0 4.76e-01 88.9% 73.4%
3431353 1128.1.1.10 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › VIN3_C 0.61 46.0 4.68e-01 83.3% 98.6%
3654814 592.1.1.9 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26051 0.60 47.0 4.43e-01 87.5% 73.3%
4134121 2004.1.1.623 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, MCM, AAA_2, AAA_5 0.54 41.0 2.69e-01 83.3% 64.2%
3597985 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 44.0 4.24e-01 94.4% 100.0%
4169057 4952.1.1.0 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.50 38.0 3.54e-01 83.3% 77.9%