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OQ717002.1__WFS86145.1__X__00050

Bact-Vir

OQ717002.1__WFS86145.1__X__00050

Identity

Accession:
OQ717002 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Taxonomy

TaxID: 3038269

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-106
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.74 61.0 4.45e-01 93.0% 50.0%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 60.0 4.99e-01 98.2% 66.3%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.70 57.0 3.31e-01 93.0% 11.2%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 58.0 4.68e-01 98.2% 54.4%
3g7kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.67 58.0 4.09e-01 100.0% 81.0%
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 54.0 3.68e-01 93.0% 63.4%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 57.0 4.84e-01 98.2% 59.6%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.65 49.0 5.26e-01 80.7% 100.0%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 53.0 3.59e-01 93.0% 55.0%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 45.0 4.28e-01 73.7% 86.6%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 50.0 3.17e-01 89.5% 91.2%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 50.0 3.22e-01 91.2% 80.1%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 50.0 4.29e-01 96.5% 56.8%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.60 45.0 4.17e-01 86.0% 68.8%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.60 42.0 3.36e-01 91.2% 37.2%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 42.0 4.24e-01 73.7% 85.7%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 44.0 3.20e-01 84.2% 38.5%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.59 43.0 3.62e-01 80.7% 73.6%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 44.0 3.11e-01 82.5% 84.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.57 43.0 3.41e-01 87.7% 47.1%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 50.0 3.71e-01 94.7% 86.1%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 45.0 3.43e-01 98.2% 80.5%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.84e-01 87.7% 28.2%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.27e-01 80.7% 57.7%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.91e-01 91.2% 75.0%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.00e-01 93.0% 100.0%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 40.0 3.06e-01 77.2% 47.9%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 4.08e-01 87.7% 68.0%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 49.0 3.54e-01 100.0% 73.5%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.05e-01 94.7% 77.8%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.16e-01 96.5% 68.1%
3rheA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 39.0 3.18e-01 77.2% 59.6%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.29e-01 80.7% 44.3%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 46.0 3.08e-01 96.5% 66.4%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 44.0 2.63e-01 98.2% 27.3%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 2.77e-01 91.2% 31.2%
3n40P02 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.52 38.0 2.55e-01 77.2% 49.3%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.56e-01 91.2% 55.9%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.52 42.0 3.19e-01 89.5% 39.0%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 43.0 2.55e-01 94.7% 33.9%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.34e-01 89.5% 55.5%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.32e-01 93.0% 95.2%
1a8dA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 2.81e-01 94.7% 89.4%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 37.0 2.81e-01 80.7% 58.6%
3dmeA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.50 42.0 3.16e-01 98.2% 97.4%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.50 43.0 3.52e-01 98.2% 75.9%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.58e-01 89.5% 80.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3274180 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.75 67.0 5.37e-01 100.0% 52.7%
3228053 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 60.0 6.12e-01 94.7% 96.4%
3257384 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 62.0 5.00e-01 96.5% 51.8%
3492079 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 5.07e-01 96.5% 74.2%
3255259 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.81e-01 98.2% 57.4%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 50.0 3.92e-01 78.9% 39.2%
3933294 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 59.0 4.89e-01 98.2% 54.3%
4116186 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.69 57.0 4.02e-01 94.7% 49.5%
3934183 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.68 58.0 4.82e-01 98.2% 54.3%
3930641 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.68 59.0 4.90e-01 100.0% 55.2%
3837276 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.68 46.0 4.46e-01 71.9% 87.7%
3928322 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 58.0 4.85e-01 100.0% 55.2%
3935967 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.67 56.0 3.54e-01 96.5% 36.1%
4932690 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.66 45.0 3.26e-01 84.2% 26.7%
4042899 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.66 55.0 3.89e-01 94.7% 51.9%
4395723 2003.1.5.153 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.66 53.0 3.64e-01 93.0% 48.8%
4646311 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.66 53.0 3.62e-01 93.0% 48.2%
None 0.65 52.0 3.57e-01 93.0% 50.9%
None 0.65 53.0 3.59e-01 93.0% 47.4%
5036655 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 50.0 4.99e-01 86.0% 93.3%
4588602 3097.1.1.1 a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.65 50.0 5.20e-01 87.7% 100.0%
3538687 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 56.0 4.62e-01 98.2% 56.2%
4679943 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.64 48.0 3.47e-01 80.7% 33.3%
3282814 3097.1.1.0 a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y 0.64 51.0 4.63e-01 91.2% 66.3%
3786356 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.63 50.0 4.16e-01 91.2% 76.4%
1556088 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.63 51.0 4.43e-01 91.2% 80.2%
4014955 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.63 51.0 4.01e-01 93.0% 62.3%
1235359 331.1.1.8 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AfAlkA-like_TBP-like 0.62 41.0 3.47e-01 100.0% 39.4%
4115593 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.61 48.0 2.96e-01 84.2% 34.5%
4978135 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 46.0 3.44e-01 80.7% 31.7%
3961965 3097.1.1.1 a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.61 48.0 4.74e-01 94.7% 81.5%
4078456 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.61 50.0 3.88e-01 98.2% 91.7%
1115581 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.61 50.0 3.80e-01 98.2% 85.7%
4930437 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.60 45.0 3.64e-01 78.9% 75.2%
3690349 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.60 46.0 2.70e-01 84.2% 13.7%
4432847 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.60 50.0 3.38e-01 98.2% 60.0%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.40e-01 84.2% 53.8%
3321190 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 46.0 2.86e-01 86.0% 89.1%
3410562 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.58 44.0 4.18e-01 82.5% 72.9%
4981489 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 42.0 4.47e-01 93.0% 88.0%
3597339 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 49.0 3.21e-01 96.5% 33.1%
5054384 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.57 41.0 3.92e-01 75.4% 72.9%
3715091 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.57 41.0 3.97e-01 93.0% 67.7%
3606266 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 2.89e-01 100.0% 73.0%
4204975 12.3.1.14 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.56 48.0 3.01e-01 100.0% 77.5%
4392365 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.56 48.0 2.99e-01 96.5% 28.1%
2387792 1205.1.1.0 a+b two layers › C-terminal domain of CdiA toxin 0.55 42.0 3.87e-01 82.5% 65.3%
3534391 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 44.0 3.04e-01 87.7% 26.3%
3605879 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.55 34.0 3.70e-01 89.5% 77.8%
None 0.55 43.0 2.81e-01 96.5% 62.4%
3484671 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.54 40.0 4.25e-01 86.0% 92.0%
3784736 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.54 44.0 3.00e-01 93.0% 86.1%
3717900 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 41.0 2.55e-01 87.7% 24.1%
3517323 3131.1.1.2 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.53 44.0 3.69e-01 100.0% 68.2%
3707788 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 46.0 3.03e-01 96.5% 64.8%
3253183 328.8.1.1 a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.53 47.0 3.02e-01 100.0% 37.4%
3949003 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.53 42.0 3.09e-01 100.0% 47.0%
4410540 3321.1.1.1 a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander 0.53 46.0 4.07e-01 100.0% 89.4%
3987919 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.52 39.0 3.21e-01 82.5% 71.8%
5052057 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.52 41.0 3.06e-01 93.0% 79.4%
5006258 205.1.1.128 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › APS-reductase_C 0.52 44.0 3.32e-01 96.5% 39.3%
3240511 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.52 44.0 3.69e-01 98.2% 81.9%
5482 205.1.1.47 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, APS-reductase_C, Fer4_7 0.52 44.0 3.30e-01 96.5% 38.3%
5008670 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 2.90e-01 96.5% 30.4%
4864839 10.1.1.25 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.51 41.0 2.86e-01 91.2% 74.9%
3942181 6150.1.1.0 a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 0.51 41.0 3.38e-01 93.0% 48.6%
4026792 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 42.0 2.57e-01 100.0% 60.0%
6677 274.1.1.9 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSG 0.51 42.0 3.51e-01 96.5% 69.4%