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OQ718882.1__WHM52831.1__IOBOPIKK_00024__00024

Bact-Vir

OQ718882.1__WHM52831.1__IOBOPIKK_00024__00024

Identity

Accession:
OQ718882 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.80 70.0 5.37e-01 100.0% 49.6%
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.77 62.0 5.04e-01 90.7% 49.0%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.76 51.0 4.61e-01 70.4% 56.8%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.75 64.0 5.69e-01 100.0% 79.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 3.72e-01 72.2% 71.8%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.73 49.0 4.25e-01 70.4% 50.6%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 51.0 4.18e-01 79.6% 74.8%
1wwiA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.69 60.0 4.41e-01 100.0% 84.4%
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 49.0 5.19e-01 90.7% 91.3%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.66 50.0 3.75e-01 81.5% 61.4%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 44.0 3.81e-01 70.4% 44.8%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 45.0 4.96e-01 87.0% 97.5%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.66 55.0 4.48e-01 100.0% 53.6%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 54.0 5.25e-01 100.0% 96.7%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.65 54.0 5.09e-01 94.4% 89.4%
1aqlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 54.0 3.17e-01 100.0% 35.3%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.64 52.0 4.60e-01 98.1% 65.2%
4yt2A02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.64 44.0 3.61e-01 74.1% 54.7%
3mhsB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.63 45.0 3.92e-01 77.8% 53.8%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 43.0 2.96e-01 72.2% 18.5%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 43.0 3.20e-01 70.4% 32.1%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 44.0 3.37e-01 74.1% 29.3%
3c18A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.62 53.0 4.21e-01 100.0% 62.7%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.61 48.0 4.29e-01 94.4% 59.3%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 41.0 3.22e-01 70.4% 36.2%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.61 51.0 3.93e-01 96.3% 60.2%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.60 48.0 3.74e-01 88.9% 38.7%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.60 40.0 3.51e-01 70.4% 45.2%
2el7A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.60 47.0 4.00e-01 94.4% 51.1%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 52.0 4.01e-01 100.0% 54.0%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 49.0 3.62e-01 94.4% 61.3%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 47.0 4.75e-01 100.0% 90.9%
3rh3A01 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.59 46.0 3.45e-01 85.2% 57.9%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 49.0 4.34e-01 100.0% 85.5%
2yi9A05 1.20.1270.270 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain 0.57 45.0 4.12e-01 92.6% 70.1%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 38.0 3.16e-01 70.4% 33.3%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.57 45.0 3.35e-01 88.9% 67.8%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 48.0 3.58e-01 98.1% 80.3%
2e8gA01 1.20.1440.150 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 45.0 3.62e-01 100.0% 60.5%
3pvuA01 1.10.287.1270 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 45.0 3.73e-01 100.0% 69.4%
7dniC02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 42.0 3.64e-01 96.3% 51.1%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 41.0 3.42e-01 92.6% 45.0%
7wjlA01 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.53 44.0 2.61e-01 94.4% 72.9%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 47.0 4.37e-01 100.0% 86.8%
5a4uF02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 37.0 2.83e-01 74.1% 40.5%
2k8oA00 1.20.5.2120 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 39.0 3.80e-01 85.2% 81.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3408790 108.2.1.1 alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP 0.77 61.0 4.87e-01 87.0% 50.5%
3955867 148.1.3.251 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647 0.76 64.0 5.93e-01 94.4% 78.6%
4940986 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.76 53.0 4.41e-01 74.1% 43.2%
3213401 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.76 64.0 5.39e-01 100.0% 56.7%
3993361 622.4.1.41 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF7753 0.74 52.0 4.93e-01 74.1% 69.2%
3706047 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.74 61.0 6.08e-01 100.0% 90.9%
4489811 103.17.1.0 alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.74 58.0 6.01e-01 90.7% 94.0%
3289114 148.1.3.251 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647 0.74 62.0 5.72e-01 94.4% 75.7%
4119015 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 62.0 6.08e-01 100.0% 91.7%
4680316 3694.1.1.0 alpha bundles › Tail specific protease helical domain › Tail specific protease helical domain › Tail specific protease helical domain 0.72 61.0 5.42e-01 98.1% 83.7%
3928496 143.1.1.0 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.71 60.0 5.81e-01 98.1% 86.7%
4507639 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.71 61.0 5.51e-01 98.1% 73.3%
3591699 138.1.1.0 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.70 58.0 4.75e-01 92.6% 63.0%
4365052 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.69 48.0 4.03e-01 74.1% 47.4%
4218930 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.69 56.0 5.18e-01 96.3% 77.3%
3587982 4125.1.1.3 alpha superhelices › BH3980-like › BH3980-like › BH3980-like › DUF1129 0.69 52.0 4.80e-01 87.0% 66.7%
3542152 397.7.1.7 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP 0.68 47.0 4.02e-01 74.1% 46.7%
3794015 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.67 47.0 3.15e-01 74.1% 19.1%
3979831 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 56.0 5.32e-01 96.3% 92.3%
4987704 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.66 52.0 5.26e-01 100.0% 92.7%
3029394 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.66 55.0 5.52e-01 100.0% 100.0%
5017220 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 4.15e-01 70.4% 70.8%
2141223 5055.1.1.1 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › CaMBD 0.65 46.0 3.83e-01 74.1% 74.7%
5050359 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.65 44.0 4.00e-01 70.4% 55.7%
4020945 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 54.0 4.94e-01 98.1% 72.0%
3798984 3560.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 0.65 44.0 2.96e-01 70.4% 19.5%
3263340 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.65 51.0 4.76e-01 92.6% 70.0%
4562001 192.1.1.2 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › GreA_GreB_N 0.63 43.0 3.81e-01 70.4% 74.7%
3253015 6088.1.1.2 alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › PF26051 0.63 52.0 4.64e-01 94.4% 66.3%
59178 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.62 42.0 3.15e-01 70.4% 31.6%
3511765 524.1.1.1 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.62 51.0 4.37e-01 98.1% 92.6%
981174 109.1.1.1 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.62 41.0 3.14e-01 70.4% 33.1%
3716423 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 52.0 3.17e-01 96.3% 45.1%
3259546 524.1.1.0 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.60 47.0 3.51e-01 90.7% 39.4%
4022199 109.1.1.1 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.60 41.0 3.02e-01 70.4% 31.1%
4992568 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.60 51.0 4.97e-01 100.0% 88.3%
5015200 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 53.0 3.28e-01 100.0% 88.7%
3337263 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.60 48.0 4.14e-01 90.7% 91.1%
3701873 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.60 50.0 3.98e-01 94.4% 90.0%
3708236 633.6.1.6 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACAD9-ACADV_C 0.59 49.0 4.09e-01 100.0% 80.0%
3353183 601.16.1.0 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.59 51.0 3.78e-01 96.3% 77.8%
4522775 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.58 48.0 3.23e-01 100.0% 90.0%
3896752 632.3.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.57 46.0 4.46e-01 88.9% 83.3%
5063117 2004.1.1.49 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase 0.57 49.0 2.92e-01 100.0% 13.1%
4957420 3290.1.1.0 alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B 0.57 44.0 3.93e-01 87.0% 86.3%
3360103 3651.1.1.3 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › DUF4378 0.57 48.0 4.10e-01 96.3% 91.1%
3217253 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.56 45.0 4.36e-01 100.0% 86.2%
3485307 605.4.1.12 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF28324 0.56 45.0 4.40e-01 100.0% 96.9%
4209005 632.15.1.4 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 0.56 46.0 4.10e-01 94.4% 77.5%
3600496 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 43.0 2.66e-01 92.6% 29.6%
184727 3495.1.1.1 alpha bundles › Integrin alpha-L cytoplasmic domain › Integrin alpha-L cytoplasmic domain › Integrin alpha-L cytoplasmic domain › Integrin_alpha 0.52 39.0 3.80e-01 85.2% 81.7%