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OQ719603.1__WHM52708.1__vBVpaP1601_15__00015
Bact-VirOQ719603.1__WHM52708.1__vBVpaP1601_15__00015
Identity
- Accession:
- OQ719603 ↗
- Kingdom:
- phage
Quality
69.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-140
D2
medium
residues 204-260_373-388
Domain cluster:
representative
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3995226 | 109.4.1.1454 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_17 | 0.67 | 45.0 | 3.07e-01 | 72.6% | 21.3% |
| 3620614 | 109.4.1.1509 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_12, TPR_16 | 0.59 | 41.0 | 2.91e-01 | 72.6% | 24.8% |
| 3740301 | 6067.1.1.0 ↗ | alpha arrays › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 | 0.55 | 31.0 | 2.09e-01 | 79.5% | 14.5% |
D3
medium
residues 261-315_339-372_389-414
Domain cluster:
rep: DQ340064.2__ABC61276.1__X__00022__D272-425
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.76 | 71.0 | 5.14e-01 | 100.0% | 59.8% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.65 | 49.0 | 5.38e-01 | 86.1% | 96.8% |
| 3bqwA02 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.62 | 58.0 | 5.42e-01 | 99.1% | 99.3% |
| 6xgpB01 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.58 | 52.0 | 4.93e-01 | 97.4% | 100.0% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 22.0 | 2.82e-01 | 91.3% | 65.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3277785 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.70 | 64.0 | 4.81e-01 | 97.4% | 48.1% |
| 5081455 | 2485.3.1.15 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT | 0.69 | 63.0 | 4.57e-01 | 98.3% | 47.3% |
| 2129825 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.69 | 63.0 | 4.67e-01 | 100.0% | 51.1% |
| 5019648 | 298.2.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like | 0.55 | 43.0 | 4.02e-01 | 86.1% | 67.9% |
| 4030000 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 32.0 | 3.41e-01 | 100.0% | 71.0% |
| 3987928 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.50 | 29.0 | 3.22e-01 | 99.1% | 69.5% |