←Back to structures

OQ721913.1__WFG79004.1__VIPECLUMC02_00302__00284

Bact-Vir

OQ721913.1__WFG79004.1__VIPECLUMC02_00302__00284

Identity

Accession:
OQ721913 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Karamvirus› Enterobacter_phage_vB_VIPECLUMC02

TaxID: 3034282

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85
PDB
Domain cluster: rep: NC_014636.1__YP_003969499.1__phiAS5_ORF0210__00210__D2-91
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 55.0 4.45e-01 100.0% 94.4%
5muaB01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 53.0 4.57e-01 97.6% 96.4%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 55.0 4.67e-01 100.0% 96.4%
1t9fA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 54.0 4.22e-01 100.0% 94.4%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 49.0 4.25e-01 97.6% 100.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.68e-01 96.4% 65.9%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.67e-01 78.3% 70.2%
2n6eA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.51 38.0 3.47e-01 78.3% 79.1%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.51 30.0 2.94e-01 72.3% 51.1%
1vjfA00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.51 46.0 3.67e-01 98.8% 80.7%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 39.0 3.03e-01 85.5% 40.1%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.30e-01 78.3% 55.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1842572 6.1.1.6 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Lipoprotein_11 0.63 56.0 4.62e-01 100.0% 100.0%
4024268 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.61 54.0 4.15e-01 100.0% 93.2%
3871471 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.60 53.0 4.53e-01 100.0% 98.5%
3528295 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.59 51.0 4.43e-01 98.8% 98.5%
3575707 6.1.1.5 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › MIR 0.59 52.0 4.04e-01 100.0% 88.8%
3442564 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.57 35.0 4.13e-01 89.2% 90.9%
4262649 812.2.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.56 25.0 2.61e-01 88.0% 41.2%
3801858 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.54 32.0 3.68e-01 89.2% 81.7%
4934962 327.18.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.51 36.0 4.01e-01 80.7% 93.8%
4503569 5.1.7.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.51 38.0 2.35e-01 81.9% 15.3%
3659202 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.51 28.0 2.93e-01 79.5% 53.8%
3657702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.16e-01 78.3% 51.4%
4973114 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.51 37.0 3.56e-01 77.1% 92.6%
None — 0.50 37.0 2.19e-01 79.5% 18.5%