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OQ721915.1__WFP46092.1__VIPPAEUMC01_00158__00157
Bact-VirOQ721915.1__WFP46092.1__VIPPAEUMC01_00158__00157
Identity
- Accession:
- OQ721915 ↗
- Kingdom:
- phage
Quality
75.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Pakpunavirus›
Pseudomonas_phage_vB_VIPPAEUMC01
TaxID: 3034284
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-73
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24116.2 best | DUF7390 | 48.2 | 1.80e-12 | 100.0% | 44.9% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.71 | 62.0 | 4.66e-01 | 100.0% | 62.7% |
| 3ldtA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.67 | 50.0 | 3.71e-01 | 84.0% | 93.1% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 53.0 | 4.38e-01 | 98.0% | 86.8% |
| 2m6nA00 | 2.20.25.20 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 41.0 | 4.25e-01 | 72.0% | 82.6% |
| 4ihqA01 | 3.30.450.370 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.59 | 50.0 | 3.51e-01 | 96.0% | 34.0% |
| 4xviA01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.58 | 39.0 | 2.81e-01 | 70.0% | 63.2% |
| 2pe4A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 41.0 | 2.41e-01 | 78.0% | 25.4% |
| 1m5q102 | 3.30.310.60 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Like-Sm ribonucleoprotein, C-terminal domain | 0.57 | 44.0 | 4.30e-01 | 90.0% | 96.6% |
| 5y6iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.54e-01 | 78.0% | 53.4% |
| 4yt3A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 44.0 | 2.65e-01 | 100.0% | 12.1% |
| 2o61A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 47.0 | 3.68e-01 | 100.0% | 59.1% |
| 1llaA03 | 1.10.1280.10 | Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase | 0.52 | 46.0 | 2.92e-01 | 100.0% | 23.6% |
| 3s8iA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 44.0 | 3.34e-01 | 98.0% | 100.0% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.52 | 38.0 | 3.45e-01 | 84.0% | 66.2% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.52 | 43.0 | 3.66e-01 | 100.0% | 64.8% |
| 2lbwA00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.52 | 44.0 | 3.35e-01 | 98.0% | 87.6% |
| 6vlfA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 35.0 | 3.44e-01 | 74.0% | 100.0% |
| 4mhgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.06e-01 | 80.0% | 43.8% |
| 1itpA00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.51 | 41.0 | 3.65e-01 | 100.0% | 61.0% |
| 5w3gA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 2.93e-01 | 80.0% | 77.3% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 3.10e-01 | 100.0% | 69.3% |
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 34.0 | 3.31e-01 | 74.0% | 94.9% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954913 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.74 | 61.0 | 4.65e-01 | 92.0% | 46.1% |
| 3306172 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.70 | 59.0 | 4.38e-01 | 100.0% | 54.3% |
| 3693747 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.69 | 41.0 | 3.41e-01 | 92.0% | 35.3% |
| 3211940 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.67 | 57.0 | 4.12e-01 | 100.0% | 75.5% |
| 3518857 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.65 | 51.0 | 2.92e-01 | 88.0% | 14.7% |
| 3944184 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 53.0 | 4.31e-01 | 98.0% | 68.6% |
| 3403609 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.65 | 54.0 | 4.72e-01 | 98.0% | 92.4% |
| 3537747 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.64 | 47.0 | 4.64e-01 | 90.0% | 72.7% |
| 3177309 | 101.1.2.7 ↗ | alpha arrays › HTH › HTH › winged helix domain › HSF_DNA-bind | 0.63 | 44.0 | 3.63e-01 | 74.0% | 52.2% |
| 4959202 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.62 | 53.0 | 4.37e-01 | 100.0% | 81.1% |
| 3764000 | 219.1.1.78 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Guanylate_cyc_2 | 0.61 | 50.0 | 3.99e-01 | 94.0% | 65.7% |
| 3497542 | 626.1.1.1 ↗ | alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 | 0.58 | 43.0 | 2.66e-01 | 86.0% | 14.1% |
| 3176914 | 3519.1.1.1 ↗ | beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p | 0.57 | 41.0 | 3.19e-01 | 82.0% | 32.5% |
| 3503411 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 39.0 | 4.05e-01 | 76.0% | 80.0% |
| 3741693 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.57 | 44.0 | 2.45e-01 | 92.0% | 6.1% |
| 3384455 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.56 | 40.0 | 2.82e-01 | 78.0% | 22.7% |
| 4243407 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.56 | 46.0 | 3.66e-01 | 98.0% | 43.5% |
| 3735265 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.55 | 43.0 | 2.50e-01 | 86.0% | 38.1% |
| 4131976 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.54 | 42.0 | 3.24e-01 | 98.0% | 99.3% |
| 3346727 | 605.1.1.224 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Myb_DNA-bind_3 | 0.54 | 44.0 | 3.97e-01 | 98.0% | 65.7% |
| 3420021 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.54 | 43.0 | 3.20e-01 | 88.0% | 37.6% |
| 4421477 | 109.2.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase | 0.54 | 40.0 | 2.30e-01 | 86.0% | 7.8% |
| 3268154 | 2004.5.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN,dDENN | 0.53 | 45.0 | 2.95e-01 | 98.0% | 43.8% |
| 3546981 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.53 | 43.0 | 3.30e-01 | 100.0% | 82.1% |
| 5052277 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 42.0 | 2.60e-01 | 94.0% | 28.1% |
| 4962043 | 386.1.1.422 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF26266 | 0.52 | 40.0 | 3.96e-01 | 96.0% | 83.6% |
| 3496532 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 40.0 | 2.15e-01 | 88.0% | 6.4% |
| 4118453 | 4050.1.1.0 ↗ | few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz | 0.51 | 36.0 | 3.78e-01 | 78.0% | 86.7% |
| 3689073 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.51 | 42.0 | 3.46e-01 | 100.0% | 96.1% |
| 4930300 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.47e-01 | 96.0% | 51.1% |