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OQ729742.1__WJJ57748.1__MidiMira_21__00021

Bact-Vir

OQ729742.1__WJJ57748.1__MidiMira_21__00021

Identity

Accession:
OQ729742 ↗
Kingdom:
phage

Quality

95.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Acadevirus› Proteus_phage_MidiMira-UFV02

TaxID: 3038306

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gh2A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.71 48.0 3.71e-01 70.8% 77.6%
3nuwA01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.70 48.0 3.89e-01 70.8% 64.4%
3d6iA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.69 47.0 3.60e-01 70.8% 78.2%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 53.0 4.51e-01 85.4% 73.4%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.67 54.0 3.87e-01 89.6% 87.3%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.66 54.0 4.74e-01 97.9% 63.6%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 45.0 2.70e-01 72.9% 15.2%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.64 48.0 4.08e-01 83.3% 56.1%
3a3jA02 2.60.410.10 Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain 0.63 50.0 4.08e-01 87.5% 89.1%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.63 53.0 4.21e-01 100.0% 71.3%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 38.0 4.29e-01 79.2% 93.3%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.62 53.0 5.18e-01 91.7% 94.2%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 48.0 4.59e-01 100.0% 74.6%
2xdvA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.62 47.0 3.69e-01 85.4% 51.8%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 43.0 3.86e-01 72.9% 86.4%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 47.0 3.13e-01 89.6% 41.2%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 37.0 4.08e-01 81.2% 84.8%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.61 45.0 3.12e-01 81.2% 29.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.37e-01 100.0% 66.2%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 50.0 3.08e-01 93.8% 23.1%
1flgA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.60 52.0 2.91e-01 97.9% 25.3%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 46.0 4.13e-01 87.5% 90.3%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 45.0 3.19e-01 87.5% 61.6%
7sulB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 2.92e-01 91.7% 93.7%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 3.75e-01 91.7% 80.4%
5hftD00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.59 45.0 3.25e-01 87.5% 87.7%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 45.0 3.38e-01 91.7% 90.0%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 39.0 3.15e-01 70.8% 71.6%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 44.0 2.71e-01 87.5% 28.0%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.58 40.0 3.78e-01 75.0% 91.9%
2odhA02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.57 44.0 3.51e-01 89.6% 93.6%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.23e-01 100.0% 71.4%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 43.0 3.19e-01 87.5% 76.0%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.76e-01 93.8% 16.9%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 2.96e-01 97.9% 20.9%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 43.0 2.78e-01 87.5% 43.5%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.55 47.0 3.33e-01 97.9% 45.2%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.55 44.0 3.37e-01 93.8% 47.6%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 40.0 3.90e-01 81.2% 92.7%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.07e-01 87.5% 38.0%
3eagA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 44.0 2.92e-01 97.9% 77.1%
5hv6A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 43.0 3.15e-01 87.5% 35.7%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 41.0 3.35e-01 89.6% 62.5%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.11e-01 100.0% 90.2%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 40.0 3.66e-01 91.7% 65.3%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 44.0 2.89e-01 100.0% 22.1%
4tpuA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 36.0 3.91e-01 97.9% 91.9%
8ciwA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.52 39.0 2.96e-01 85.4% 97.0%
4s39A02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.52 42.0 3.30e-01 97.9% 84.5%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.50 41.0 2.85e-01 100.0% 81.5%
2qyvA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 36.0 2.42e-01 87.5% 93.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739946 5.1.4.265 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.73 49.0 2.88e-01 70.8% 15.3%
4558605 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.70 58.0 4.49e-01 100.0% 80.0%
4989777 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 48.0 2.88e-01 70.8% 17.5%
4535258 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.69 57.0 4.52e-01 100.0% 76.4%
3596051 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.69 55.0 4.31e-01 89.6% 77.1%
4978884 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.69 56.0 4.88e-01 91.7% 81.3%
3174106 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.68 46.0 3.48e-01 70.8% 73.3%
3713384 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.68 46.0 3.13e-01 70.8% 96.0%
5049872 56.2.1.0 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT 0.67 54.0 4.90e-01 95.8% 81.4%
3377711 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.67 49.0 4.01e-01 81.2% 54.7%
3801175 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 48.0 3.77e-01 77.1% 50.0%
3277795 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.65 50.0 3.62e-01 83.3% 69.6%
5049994 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.65 53.0 4.62e-01 91.7% 72.0%
4971539 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.65 53.0 4.57e-01 91.7% 70.7%
None — 0.64 51.0 3.00e-01 85.4% 40.3%
3239923 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.64 53.0 4.28e-01 95.8% 62.1%
4553383 319.1.1.27 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF5450 0.63 51.0 4.55e-01 91.7% 77.1%
3196827 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 52.0 4.56e-01 95.8% 88.0%
3268583 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.62 49.0 4.21e-01 91.7% 67.1%
2276 4112.1.1.1 ↗ beta duplicates or obligate multimers › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX 0.62 55.0 4.94e-01 100.0% 79.1%
4965319 241.11.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › Luciferase 0.61 45.0 3.34e-01 81.2% 31.9%
4946183 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.61 49.0 4.35e-01 93.8% 70.7%
3965213 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.61 48.0 2.95e-01 85.4% 39.3%
3212072 2002.1.1.134 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.61 50.0 2.98e-01 91.7% 28.8%
3305644 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.60 49.0 3.71e-01 93.8% 77.4%
3316053 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 2.64e-01 87.5% 15.3%
3408563 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.60 52.0 3.16e-01 95.8% 21.3%
3472406 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.59 50.0 3.16e-01 100.0% 75.0%
3931157 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 52.0 4.68e-01 97.9% 81.5%
3335113 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.59 46.0 3.79e-01 85.4% 70.0%
4039170 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.59 50.0 3.19e-01 97.9% 79.2%
3900771 330.9.1.0 ↗ a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.59 43.0 4.06e-01 97.9% 63.3%
3621100 59.1.2.4 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Leo1 0.59 47.0 3.71e-01 91.7% 69.5%
4950216 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.59 40.0 4.08e-01 72.9% 75.0%
5055345 5.1.5.162 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_ACSF4 0.58 51.0 3.06e-01 100.0% 86.9%
3181168 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.58 48.0 2.84e-01 93.8% 13.2%
3744129 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 45.0 2.84e-01 91.7% 24.0%
3407411 5.1.4.293 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_EML_2 0.57 49.0 3.01e-01 100.0% 75.3%
4162022 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.57 42.0 3.79e-01 89.6% 60.0%
3079511 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 50.0 2.98e-01 97.9% 19.4%
3700776 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 47.0 4.17e-01 91.7% 70.0%
3359034 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.56 45.0 2.95e-01 93.8% 24.7%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 45.0 4.25e-01 100.0% 73.8%
3699984 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 42.0 2.60e-01 85.4% 42.7%
3475647 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 50.0 3.13e-01 100.0% 26.4%
3318809 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.55 36.0 2.80e-01 70.8% 29.2%
4958235 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.54 44.0 3.68e-01 87.5% 64.7%
2486950 7052.1.1.1 ↗ a+b two layers › N-terminal domain of PprA › N-terminal domain of PprA › N-terminal domain of PprA › PF29825 0.54 42.0 3.36e-01 87.5% 72.8%
4932109 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.54 46.0 4.11e-01 100.0% 88.6%
3260669 5.1.4.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.53 46.0 2.67e-01 97.9% 14.3%
3926998 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 41.0 3.53e-01 97.9% 56.2%