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OQ745668.1__WLJ89333.1__X__00022
Bact-VirOQ745668.1__WLJ89333.1__X__00022
Identity
- Accession:
- OQ745668 ↗
- Kingdom:
- phage
Quality
74.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autosignataviridae›
Kaohsiungvirus›
Vibrio_phage_vB_ValA_R15Z
TaxID: 3044218
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-129
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.81 | 58.0 | 4.46e-01 | 75.7% | 35.8% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 49.0 | 5.05e-01 | 70.0% | 72.3% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 61.0 | 6.26e-01 | 95.7% | 100.0% |
| 3ismC01 | 1.25.40.240 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain | 0.69 | 57.0 | 4.40e-01 | 90.0% | 46.8% |
| 5l0wB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 56.0 | 4.45e-01 | 91.4% | 44.9% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.68 | 53.0 | 4.83e-01 | 100.0% | 64.1% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.67 | 51.0 | 4.35e-01 | 91.4% | 50.0% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.67 | 57.0 | 5.03e-01 | 100.0% | 65.0% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.66 | 56.0 | 4.78e-01 | 92.9% | 63.4% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.65 | 54.0 | 5.06e-01 | 91.4% | 83.9% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.65 | 45.0 | 3.38e-01 | 72.9% | 44.8% |
| 3rjvA02 | 1.25.40.740 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 46.0 | 4.77e-01 | 84.3% | 81.2% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.64 | 58.0 | 4.23e-01 | 100.0% | 94.5% |
| 1lwbA00 | 1.20.90.10 | Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain | 0.64 | 56.0 | 4.73e-01 | 100.0% | 61.5% |
| 4g1tA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 55.0 | 4.66e-01 | 100.0% | 76.4% |
| 7xxiA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 54.0 | 3.57e-01 | 97.1% | 70.0% |
| 8ex5A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.61 | 52.0 | 3.70e-01 | 100.0% | 30.6% |
| 1werA02 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.60 | 53.0 | 4.18e-01 | 100.0% | 97.3% |
| 3j27A05 | 1.20.1280.260 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 53.0 | 4.75e-01 | 100.0% | 81.0% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.60 | 44.0 | 3.16e-01 | 100.0% | 24.8% |
| 8sppA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.60 | 50.0 | 3.20e-01 | 94.3% | 37.7% |
| 1xeqB00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.59 | 41.0 | 3.94e-01 | 80.0% | 62.4% |
| 2o36A01 | 1.20.1050.40 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 | 0.59 | 46.0 | 3.93e-01 | 91.4% | 67.2% |
| 1r76A00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 49.0 | 3.12e-01 | 97.1% | 57.6% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.58 | 47.0 | 4.46e-01 | 91.4% | 94.1% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 47.0 | 4.19e-01 | 91.4% | 84.5% |
| 4eqyA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.58 | 48.0 | 4.88e-01 | 98.6% | 95.7% |
| 3craA02 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.57 | 46.0 | 3.79e-01 | 100.0% | 48.4% |
| 2irmA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.57 | 46.0 | 3.02e-01 | 91.4% | 62.2% |
| 4aqnA02 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.57 | 49.0 | 3.59e-01 | 95.7% | 99.0% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.56 | 44.0 | 4.61e-01 | 95.7% | 95.3% |
| 1n69B00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.53 | 38.0 | 3.69e-01 | 77.1% | 76.2% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.51 | 37.0 | 3.12e-01 | 78.6% | 47.1% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3214189 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.86 | 62.0 | 5.34e-01 | 75.7% | 83.8% |
| 5074225 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.84 | 62.0 | 5.62e-01 | 77.1% | 82.2% |
| 223819 | 109.28.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › EssB extracellular domain › EssB extracellular domain › YukC | 0.81 | 58.0 | 4.47e-01 | 75.7% | 36.2% |
| 4034449 | 109.28.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › EssB extracellular domain › EssB extracellular domain › YukC | 0.80 | 58.0 | 4.50e-01 | 77.1% | 36.7% |
| 5004436 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 61.0 | 4.48e-01 | 85.7% | 52.6% |
| 3773998 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 52.0 | 3.34e-01 | 75.7% | 16.1% |
| 3229748 | 1134.1.1.9 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › RSLD_CPSF6 | 0.74 | 61.0 | 5.72e-01 | 91.4% | 72.9% |
| 3724384 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.71 | 57.0 | 3.85e-01 | 87.1% | 47.2% |
| 3264555 | 532.2.1.0 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains | 0.70 | 56.0 | 5.65e-01 | 94.3% | 87.1% |
| 3495266 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 57.0 | 3.98e-01 | 90.0% | 46.2% |
| 3924801 | 109.4.1.1643 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 | 0.70 | 57.0 | 5.12e-01 | 91.4% | 65.3% |
| 5070891 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.69 | 57.0 | 5.45e-01 | 90.0% | 81.2% |
| 3394861 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.69 | 61.0 | 4.46e-01 | 100.0% | 90.3% |
| 3928095 | 109.4.1.373 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG4_m | 0.69 | 52.0 | 3.12e-01 | 82.9% | 39.2% |
| 5074304 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.69 | 62.0 | 3.91e-01 | 98.6% | 32.9% |
| 4987680 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.69 | 50.0 | 3.24e-01 | 78.6% | 55.7% |
| 3379886 | 604.12.1.85 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 14-3-3 | 0.69 | 49.0 | 4.47e-01 | 75.7% | 60.6% |
| 4460746 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.68 | 55.0 | 4.10e-01 | 90.0% | 92.2% |
| 4949773 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.67 | 55.0 | 4.30e-01 | 88.6% | 91.7% |
| 5005588 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.67 | 55.0 | 4.00e-01 | 91.4% | 83.1% |
| 143026 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.66 | 55.0 | 3.82e-01 | 94.3% | 35.8% |
| 4028626 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.63 | 50.0 | 3.81e-01 | 87.1% | 98.8% |
| 4968943 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 45.0 | 4.30e-01 | 77.1% | 84.7% |
| 3505950 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.63 | 53.0 | 4.99e-01 | 98.6% | 81.1% |
| 3912101 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.62 | 48.0 | 4.36e-01 | 87.1% | 77.0% |
| 3924442 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.61 | 49.0 | 4.32e-01 | 91.4% | 70.9% |
| 3594310 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.61 | 52.0 | 5.04e-01 | 98.6% | 90.0% |
| 3249674 | 604.5.1.32 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TMEM120A-B | 0.60 | 51.0 | 3.60e-01 | 98.6% | 63.3% |
| 4059065 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.60 | 54.0 | 4.84e-01 | 100.0% | 77.8% |
| 5042887 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.60 | 52.0 | 3.53e-01 | 98.6% | 67.2% |
| 4027161 | 109.4.1.1602 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IMB1 | 0.59 | 45.0 | 2.70e-01 | 91.4% | 10.4% |
| 4465067 | 6058.1.1.1 ↗ | alpha arrays › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › DAO_C | 0.58 | 45.0 | 3.70e-01 | 87.1% | 46.7% |
| 4501780 | 310.2.1.5 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › DUF842 | 0.57 | 38.0 | 3.16e-01 | 70.0% | 100.0% |
| 4015213 | 3444.1.1.0 ↗ | alpha arrays › DP domain › DP domain › DP domain | 0.55 | 44.0 | 3.87e-01 | 88.6% | 81.9% |
| 4028008 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 45.0 | 3.24e-01 | 100.0% | 31.7% |
| 2325180 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.53 | 37.0 | 3.28e-01 | 78.6% | 50.0% |