←Back to structures
OQ790079.1__WJE88486.1__X__00110
Bact-VirOQ790079.1__WJE88486.1__X__00110
Identity
- Accession:
- OQ790079 ↗
- Kingdom:
- phage
Quality
80.0
mean pLDDT
Taxonomy
TaxID: 3044023
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 143-216
Domain cluster:
rep: MZ079855.1__QXN67532.1__X__00046__D355-411
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24168.2 best | PB4_spike | 85.1 | 7.00e-24 | 100.0% | 22.1% |
D2
high
residues 438-593
Domain cluster:
rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00157__D2-120
D3
high
residues 735-869
Domain cluster:
rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00157__D2-120
D4
medium
residues 1-64
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24168.2 best | PB4_spike | 80.3 | 2.10e-22 | 73.4% | 14.9% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v1lA00 | 3.10.450.430 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 | 0.69 | 55.0 | 4.36e-01 | 85.9% | 50.4% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.64 | 45.0 | 3.87e-01 | 75.0% | 75.2% |
| 3cxbA02 | 3.30.390.70 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Salmonella typhimurium protein | 0.64 | 45.0 | 3.90e-01 | 76.6% | 76.4% |
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.63 | 56.0 | 4.37e-01 | 100.0% | 66.7% |
| 4fvmA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.63 | 44.0 | 2.95e-01 | 73.4% | 38.9% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 43.0 | 2.86e-01 | 73.4% | 32.8% |
| 4g7nA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.61 | 44.0 | 3.61e-01 | 76.6% | 63.6% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 46.0 | 3.69e-01 | 84.4% | 56.8% |
| 2uurA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 46.0 | 3.26e-01 | 90.6% | 41.4% |
| 1a6zA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 49.0 | 3.56e-01 | 98.4% | 78.2% |
| 4bq6F00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.56 | 45.0 | 3.44e-01 | 87.5% | 71.8% |
| 6igbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 46.0 | 2.99e-01 | 100.0% | 42.7% |
| 1k1yB02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 48.0 | 3.27e-01 | 100.0% | 82.5% |
| 1t7vA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 48.0 | 3.52e-01 | 98.4% | 78.1% |
| 4ci8A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 46.0 | 3.03e-01 | 100.0% | 46.2% |
| 2zgoA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 3.32e-01 | 90.6% | 52.1% |
| 1fneA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.54 | 39.0 | 3.68e-01 | 81.2% | 62.0% |
| 5nldB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 44.0 | 3.49e-01 | 92.2% | 77.5% |
| 2lm3A00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.54 | 38.0 | 2.73e-01 | 75.0% | 54.6% |
| 2wkkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 3.26e-01 | 89.1% | 53.3% |
| 1hyrC01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 41.0 | 3.12e-01 | 92.2% | 73.9% |
| 5hy7B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 2.71e-01 | 100.0% | 44.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3692564 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.65 | 46.0 | 2.79e-01 | 75.0% | 22.0% |
| 3612462 | 77.3.1.3 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN | 0.64 | 54.0 | 4.49e-01 | 93.8% | 80.9% |
| 3600915 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.64 | 56.0 | 3.51e-01 | 100.0% | 26.9% |
| 3527783 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.61 | 48.0 | 2.98e-01 | 89.1% | 21.0% |
| 4378664 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 43.0 | 2.91e-01 | 78.1% | 24.2% |
| 4950402 | 881.4.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB | 0.59 | 46.0 | 3.66e-01 | 84.4% | 100.0% |
| 3916473 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 47.0 | 4.10e-01 | 89.1% | 87.0% |
| 3894532 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.58 | 46.0 | 3.36e-01 | 90.6% | 44.6% |
| 3915512 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.58 | 50.0 | 2.79e-01 | 100.0% | 34.2% |
| 4441857 | 3347.1.1.6 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531, TEN_YD-shell | 0.57 | 47.0 | 2.89e-01 | 92.2% | 16.7% |
| 4452121 | 205.1.1.35 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 | 0.57 | 43.0 | 3.29e-01 | 81.2% | 54.5% |
| 4053910 | 3953.1.1.2 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 | 0.57 | 44.0 | 3.85e-01 | 85.9% | 78.0% |
| 3726720 | 1013.1.1.1 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 | 0.57 | 34.0 | 2.40e-01 | 71.9% | 16.5% |
| 4570038 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.56 | 46.0 | 2.58e-01 | 98.4% | 33.3% |
| 4927064 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 44.0 | 3.36e-01 | 92.2% | 65.1% |
| 2418904 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.56 | 46.0 | 2.99e-01 | 100.0% | 42.7% |
| 5033616 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.56 | 45.0 | 3.06e-01 | 92.2% | 98.4% |
| 3447378 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 49.0 | 3.27e-01 | 98.4% | 51.0% |
| 3266201 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.55 | 46.0 | 3.01e-01 | 100.0% | 46.5% |
| 3798192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 37.0 | 2.57e-01 | 70.3% | 19.6% |
| 3461115 | 207.1.1.103 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 | 0.55 | 47.0 | 3.08e-01 | 100.0% | 42.3% |
| 3441806 | 207.1.1.103 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 | 0.54 | 47.0 | 2.91e-01 | 100.0% | 31.0% |
| 4031984 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.53 | 45.0 | 3.74e-01 | 100.0% | 64.0% |
| 3585591 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.52 | 36.0 | 3.23e-01 | 70.3% | 50.0% |
| 4392365 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.52 | 43.0 | 2.83e-01 | 100.0% | 46.9% |
| 2559738 | 79.1.1.9 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer | 0.51 | 42.0 | 2.76e-01 | 100.0% | 22.9% |
| 3540949 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 41.0 | 2.79e-01 | 96.9% | 43.4% |
| 3173334 | 381.1.1.1 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR | 0.51 | 37.0 | 3.00e-01 | 79.7% | 71.9% |
| 5069872 | 221.1.1.50 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 | 0.50 | 40.0 | 3.26e-01 | 87.5% | 56.7% |
D5
medium
residues 65-137
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24168.2 best | PB4_spike | 103.8 | 1.50e-29 | 100.0% | 22.8% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lf6A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 41.0 | 2.82e-01 | 79.5% | 66.3% |
| 2qsfA01 | 3.90.260.10 | Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like | 0.55 | 43.0 | 2.99e-01 | 90.4% | 94.4% |
| 4g7nA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 41.0 | 3.46e-01 | 80.8% | 48.8% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 41.0 | 3.07e-01 | 80.8% | 35.0% |
| 2mctA00 | 2.60.40.4250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.36e-01 | 74.0% | 82.4% |
| 4bhrA00 | 3.30.1300.70 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.52 | 40.0 | 3.90e-01 | 83.6% | 80.2% |
| 2jeuA02 | 2.170.200.10 | Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain | 0.51 | 35.0 | 3.18e-01 | 71.2% | 61.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955729 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 44.0 | 3.41e-01 | 80.8% | 58.2% |
| 5081206 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.58 | 48.0 | 3.04e-01 | 95.9% | 66.7% |
| 3996555 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 42.0 | 3.89e-01 | 83.6% | 94.7% |
| 4681650 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.53 | 40.0 | 3.08e-01 | 80.8% | 35.4% |
| 5034088 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.53 | 42.0 | 3.38e-01 | 87.7% | 74.0% |
| 4000387 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.52e-01 | 84.9% | 65.7% |