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OQ790161.1__WJJ55063.1__X__00186

Bact-Vir

OQ790161.1__WJJ55063.1__X__00186

Identity

Accession:
OQ790161 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_RTH11

TaxID: 3044021

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-96
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ec4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 47.0 3.89e-01 83.0% 80.7%
1k3eB02 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 42.0 4.05e-01 71.3% 100.0%
3iv4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 33.0 3.12e-01 94.7% 44.6%
3ty5A01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.60 43.0 3.01e-01 76.6% 67.0%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 38.0 3.42e-01 84.0% 47.7%
2r7hB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 39.0 3.31e-01 71.3% 85.5%
4a2bA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 38.0 3.83e-01 84.0% 69.5%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.61e-01 95.7% 54.2%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.62e-01 100.0% 56.5%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 34.0 3.74e-01 96.8% 76.6%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 46.0 3.51e-01 100.0% 80.3%
1nbeB01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.52 37.0 3.79e-01 75.5% 93.5%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 3.16e-01 91.5% 50.8%
3n2qA02 3.30.300.190 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 39.0 3.67e-01 86.2% 67.2%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.52e-01 100.0% 65.7%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 43.0 4.00e-01 94.7% 81.5%
2zdjA00 3.10.450.450 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 29.0 3.39e-01 80.9% 79.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953046 1001.1.1.4 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdopterin_N 0.69 27.0 3.58e-01 73.4% 66.0%
4619775 206.1.3.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.63 45.0 3.57e-01 97.9% 36.6%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.62 46.0 4.98e-01 88.3% 98.7%
4195948 206.1.3.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.60 44.0 3.47e-01 100.0% 37.9%
4408163 206.1.3.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.60 44.0 3.47e-01 97.9% 37.9%
None — 0.60 44.0 3.44e-01 98.9% 36.9%
4165484 206.1.3.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.59 43.0 3.38e-01 98.9% 36.0%
3262125 102.1.3.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.58 47.0 4.13e-01 87.2% 66.4%
3740262 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.58e-01 95.7% 51.5%
3992789 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 39.0 3.90e-01 95.7% 73.7%
3512115 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.54 33.0 3.83e-01 93.6% 87.7%
4970120 321.1.1.1 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C 0.52 44.0 3.01e-01 94.7% 65.9%
3698942 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.52 43.0 3.82e-01 89.4% 87.4%
3591875 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.51 32.0 3.29e-01 94.7% 64.4%
4996690 4160.1.1.0 ↗ beta complex topology › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) 0.51 38.0 2.93e-01 80.9% 91.3%
3700570 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 43.0 3.66e-01 95.7% 75.6%