←Back to structures

OQ790161.1__WJJ55102.1__X__00225

Bact-Vir

OQ790161.1__WJJ55102.1__X__00225

Identity

Accession:
OQ790161 ↗
Kingdom:
phage

Quality

41.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_RTH11

TaxID: 3044021

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-74
PDB
Domain cluster: rep: MW879341.1__QXO10862.1__pEaSNUABM54_00036__00036__D11-77
D2 medium residues 77-145
PDB
Domain cluster: rep: LC667451.1__BDD79839.1__X__00320__D73-157
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7oodf01 3.10.430.100 Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain 0.71 63.0 6.16e-01 100.0% 97.4%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 50.0 4.25e-01 100.0% 67.4%
2jzkA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 43.0 3.87e-01 84.1% 87.4%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 4.27e-01 98.6% 67.0%
4c2dA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 42.0 3.85e-01 81.2% 90.3%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 39.0 2.54e-01 76.8% 17.6%
4fxtA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.55 41.0 3.84e-01 79.7% 84.9%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 31.0 3.20e-01 75.4% 56.1%
4yokA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.55 41.0 3.77e-01 81.2% 85.1%
1lxmA04 2.60.40.1380 Mainly Beta › Sandwich › Immunoglobulin-like › E set domains; domain 4 0.55 46.0 4.47e-01 95.7% 85.5%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 40.0 2.88e-01 79.7% 28.6%
4oevA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 46.0 3.63e-01 100.0% 49.7%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 31.0 3.30e-01 94.2% 65.6%
4ncdA02 2.60.40.3970 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 4.08e-01 94.2% 96.6%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 3.65e-01 88.4% 99.0%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 4.06e-01 98.6% 75.8%
1ibyA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 44.0 3.83e-01 100.0% 68.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4197431 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 59.0 5.85e-01 88.4% 98.6%
4356092 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.71 63.0 5.76e-01 100.0% 85.6%
3285986 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.56 45.0 3.57e-01 91.3% 54.5%
3949015 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.55 47.0 3.77e-01 100.0% 56.0%
4250106 101.1.2.274 ↗ alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.55 47.0 3.28e-01 100.0% 32.9%
4002542 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 4.32e-01 100.0% 93.7%
5044385 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.54 46.0 3.34e-01 100.0% 94.3%
3281841 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 43.0 3.16e-01 88.4% 64.0%
D3 medium residues 152-184_203-316
PDB
D4 medium residues 317-490
PDB