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OQ790161.1__WJJ55200.1__X__00323
Bact-VirOQ790161.1__WJJ55200.1__X__00323
Identity
- Accession:
- OQ790161 ↗
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-104
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25614.2 best | PhiKZ_VTX | 79.2 | 4.60e-22 | 100.0% | 32.7% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.64 | 43.0 | 3.49e-01 | 100.0% | 36.3% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 44.0 | 4.46e-01 | 88.9% | 74.2% |
| 1j09A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 45.0 | 4.57e-01 | 76.8% | 83.7% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.60 | 44.0 | 4.29e-01 | 76.8% | 89.8% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 41.0 | 4.10e-01 | 100.0% | 68.0% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 37.0 | 4.31e-01 | 74.7% | 91.2% |
| 3ecsC01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.59 | 50.0 | 5.07e-01 | 97.0% | 99.0% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 40.0 | 4.06e-01 | 100.0% | 71.9% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 45.0 | 4.01e-01 | 90.9% | 57.5% |
| 1t5oA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.57 | 49.0 | 4.38e-01 | 97.0% | 73.0% |
| 4u04A02 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.56 | 49.0 | 3.73e-01 | 96.0% | 59.0% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.56 | 43.0 | 4.23e-01 | 100.0% | 76.9% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 42.0 | 4.11e-01 | 94.9% | 72.3% |
| 3zuxA00 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.55 | 48.0 | 3.47e-01 | 100.0% | 65.3% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 41.0 | 4.40e-01 | 78.8% | 91.8% |
| 1f0lA02 | 1.10.490.40 | Mainly Alpha › Orthogonal Bundle › Globin-like › Diphtheria toxin, translocation domain | 0.54 | 40.0 | 3.43e-01 | 79.8% | 69.5% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 43.0 | 4.24e-01 | 88.9% | 85.8% |
| 4xvxA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 43.0 | 4.24e-01 | 92.9% | 94.6% |
| 4e84B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 40.0 | 2.91e-01 | 83.8% | 92.6% |
| 2fgeA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 39.0 | 2.92e-01 | 77.8% | 60.7% |
| 3uitA01 | 1.20.1440.360 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 41.0 | 3.81e-01 | 98.0% | 67.5% |
| 4ki9A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 43.0 | 3.77e-01 | 98.0% | 96.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955719 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.66 | 51.0 | 4.10e-01 | 82.8% | 77.4% |
| 4310342 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.65 | 49.0 | 3.92e-01 | 79.8% | 45.1% |
| 5000678 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 42.0 | 4.22e-01 | 100.0% | 68.0% |
| 3375117 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.62 | 45.0 | 3.97e-01 | 91.9% | 51.0% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 49.0 | 4.80e-01 | 100.0% | 80.0% |
| 3390061 | 5063.1.1.22 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › LIN9_C | 0.60 | 46.0 | 4.49e-01 | 81.8% | 80.0% |
| 5025027 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.60 | 44.0 | 4.08e-01 | 86.9% | 61.6% |
| 4986335 | 601.1.1.154 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Na_Ca_ex | 0.58 | 43.0 | 3.98e-01 | 79.8% | 78.5% |
| 4021491 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 43.0 | 3.56e-01 | 91.9% | 42.8% |
| 4951073 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.58 | 50.0 | 4.53e-01 | 97.0% | 74.8% |
| 5080854 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.58 | 43.0 | 3.61e-01 | 80.8% | 86.1% |
| 3232628 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.58 | 43.0 | 4.15e-01 | 79.8% | 83.5% |
| 3589591 | 601.32.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N | 0.57 | 42.0 | 4.58e-01 | 78.8% | 96.2% |
| 3682040 | 101.1.10.36 ↗ | alpha arrays › HTH › HTH › Cyclin-like › MOM1 | 0.56 | 39.0 | 3.59e-01 | 100.0% | 54.1% |
| 3353615 | 101.1.10.21 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C | 0.56 | 40.0 | 3.02e-01 | 100.0% | 30.0% |
| 4969504 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.56 | 47.0 | 3.94e-01 | 94.9% | 65.1% |
| 3677809 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.55 | 48.0 | 4.31e-01 | 99.0% | 99.3% |
| 4292652 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.55 | 41.0 | 3.16e-01 | 79.8% | 54.0% |
| 3280004 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.55 | 47.0 | 3.89e-01 | 100.0% | 55.9% |
| 3814554 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.54 | 40.0 | 2.64e-01 | 80.8% | 23.8% |
| 4437398 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.53 | 39.0 | 3.49e-01 | 98.0% | 55.6% |
| 4480141 | 604.39.1.2 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › BioY | 0.52 | 45.0 | 3.72e-01 | 100.0% | 76.9% |
| 4475946 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.52 | 38.0 | 3.44e-01 | 97.0% | 56.4% |
| 3838304 | 5050.1.1.20 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_4 | 0.52 | 37.0 | 3.00e-01 | 72.7% | 83.8% |
| 4284324 | 604.39.1.2 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › BioY | 0.52 | 44.0 | 3.70e-01 | 100.0% | 74.7% |
| 3263307 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.51 | 41.0 | 3.69e-01 | 98.0% | 61.4% |
| 3489262 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.51 | 42.0 | 3.87e-01 | 90.9% | 84.6% |
| 3799909 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 37.0 | 2.96e-01 | 79.8% | 37.0% |
D2
high
residues 113-180
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25614.2 best | PhiKZ_VTX | 78.8 | 6.10e-22 | 100.0% | 21.1% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n40A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.62 | 48.0 | 3.08e-01 | 89.7% | 21.1% |
| 4qtcA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.61 | 44.0 | 3.28e-01 | 79.4% | 100.0% |
| 3ut4A00 | 1.25.40.750 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 | 0.55 | 37.0 | 3.12e-01 | 70.6% | 82.0% |
| 1yz4B01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 44.0 | 3.49e-01 | 94.1% | 97.4% |
| 4akgA01 | 1.20.1050.130 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 38.0 | 2.77e-01 | 80.9% | 33.2% |
| 3mfnB00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 36.0 | 3.02e-01 | 85.3% | 41.3% |
| 4ri6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 36.0 | 3.09e-01 | 76.5% | 55.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989304 | 633.16.1.9 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › DDE_Tnp_IS66 | 0.58 | 42.0 | 3.73e-01 | 80.9% | 82.7% |
| 149025 | 109.4.1.230 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF5071 | 0.55 | 37.0 | 3.12e-01 | 70.6% | 82.0% |
| 3781989 | 109.4.1.1592 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, HEAT_EZ, TPR_IMB1 | 0.54 | 39.0 | 2.25e-01 | 80.9% | 13.1% |
| 3232268 | 109.40.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Hira | 0.50 | 36.0 | 2.97e-01 | 79.4% | 49.7% |