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OQ808964.1__WGM54828.1__FNU4_42__00042

Bact-Vir

OQ808964.1__WGM54828.1__FNU4_42__00042

Identity

Accession:
OQ808964 ↗
Kingdom:
phage

Quality

93.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fusobacterium_phage_vB_FnuS_FNU4

TaxID: 3041488

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 170-220
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.82 72.0 5.94e-01 98.0% 67.4%
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.70 55.0 4.70e-01 96.1% 73.7%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 57.0 5.65e-01 100.0% 92.7%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.66 49.0 4.85e-01 82.4% 100.0%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.65 46.0 4.06e-01 76.5% 52.6%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 51.0 4.60e-01 96.1% 62.2%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.65 54.0 4.66e-01 100.0% 67.0%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 45.0 3.81e-01 74.5% 65.5%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 41.0 3.84e-01 84.3% 52.2%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.61 50.0 4.21e-01 98.0% 65.3%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.61 50.0 4.30e-01 100.0% 55.7%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 46.0 4.21e-01 88.2% 61.8%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.60 51.0 4.29e-01 100.0% 58.7%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 42.0 3.82e-01 90.2% 54.2%
3ajfA00 1.20.1440.190 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein 0.59 42.0 3.51e-01 76.5% 43.5%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.59 41.0 3.77e-01 72.5% 77.9%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.59 41.0 3.82e-01 78.4% 97.2%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 41.0 4.28e-01 98.0% 82.6%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 43.0 3.98e-01 100.0% 61.2%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 45.0 3.91e-01 92.2% 54.4%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.57 38.0 3.56e-01 70.6% 100.0%
4qgpB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.57 41.0 3.31e-01 78.4% 81.3%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.57 41.0 3.24e-01 78.4% 35.7%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.61e-01 100.0% 94.5%
2of7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 40.0 3.01e-01 88.2% 27.9%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 39.0 4.25e-01 100.0% 92.5%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 38.0 2.55e-01 74.5% 49.3%
3hjeA03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.55 45.0 3.85e-01 96.1% 96.7%
3sp1A02 1.20.120.1910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cysteine-tRNA ligase, C-terminal anti-codon recognition domain 0.55 47.0 3.44e-01 100.0% 47.0%
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 40.0 4.16e-01 98.0% 87.0%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.55 35.0 3.47e-01 76.5% 58.6%
2knjA00 1.10.150.440 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.54 43.0 3.80e-01 100.0% 68.9%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 44.0 3.31e-01 100.0% 61.9%
5cqgA03 1.10.10.2210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 37.0 3.23e-01 72.5% 74.7%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 44.0 3.89e-01 94.1% 87.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 46.0 3.44e-01 100.0% 63.9%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.53 39.0 3.61e-01 86.3% 58.1%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.51 38.0 3.41e-01 86.3% 75.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975876 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.83 73.0 4.31e-01 98.0% 16.2%
3598953 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.81 72.0 4.20e-01 100.0% 15.4%
137614 206.1.3.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.80 72.0 4.19e-01 100.0% 15.3%
3997882 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.75 62.0 5.76e-01 100.0% 73.8%
5044957 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.71 64.0 5.69e-01 100.0% 87.1%
4010451 3788.1.1.15 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.69 55.0 4.92e-01 90.2% 70.7%
5077428 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 40.0 3.26e-01 100.0% 33.3%
3928625 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.68 54.0 4.77e-01 100.0% 60.0%
3834278 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.66 46.0 4.31e-01 78.4% 58.5%
3494078 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 4.07e-01 70.6% 84.6%
4650016 3949.1.1.1 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.64 48.0 4.53e-01 84.3% 87.7%
3831972 103.1.1.14 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.63 43.0 4.23e-01 84.3% 65.5%
3924709 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.62 42.0 3.88e-01 70.6% 84.6%
5016115 632.11.1.17 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF1722 0.62 51.0 4.76e-01 100.0% 74.3%
3275225 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 43.0 3.79e-01 74.5% 56.0%
3711335 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 43.0 2.86e-01 78.4% 17.0%
4433184 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.61 45.0 4.43e-01 80.4% 90.9%
3893344 605.1.1.228 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF4554 0.61 47.0 4.54e-01 88.2% 78.3%
3789626 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 41.0 3.86e-01 72.5% 67.7%
3247201 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 41.0 4.19e-01 72.5% 78.0%
3557614 170.1.1.28 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF25914 0.60 46.0 4.43e-01 100.0% 75.0%
3198528 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.59 44.0 4.33e-01 82.4% 94.5%
3619884 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 41.0 2.81e-01 96.1% 20.6%
3191284 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.59 43.0 4.39e-01 80.4% 96.0%
5025683 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.58 43.0 4.26e-01 92.2% 76.4%
3746719 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.58 44.0 4.38e-01 100.0% 78.2%
4956322 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.57 43.0 2.79e-01 80.4% 36.7%
3240217 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.57 40.0 3.38e-01 78.4% 41.1%
2862701 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.56 47.0 3.79e-01 100.0% 73.6%
55560 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.56 45.0 3.76e-01 100.0% 93.4%
4979555 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.55 39.0 3.77e-01 80.4% 66.7%
3678680 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.54 37.0 2.60e-01 70.6% 40.0%
4951019 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.53 40.0 3.42e-01 88.2% 72.6%
3783816 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.52 41.0 3.28e-01 92.2% 42.7%
4131215 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.51 43.0 2.78e-01 96.1% 25.6%
D2 medium residues 1-13_29-112
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 46.0 5.20e-01 76.3% 95.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 45.0 5.10e-01 77.3% 98.6%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.65 42.0 4.42e-01 74.2% 74.4%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.64 43.0 4.64e-01 74.2% 84.8%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.63 38.0 2.66e-01 74.2% 17.5%
1mwsA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 39.0 2.75e-01 74.2% 19.6%
1ik3A04 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 3.82e-01 74.2% 67.9%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 42.0 3.63e-01 77.3% 90.4%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.62e-01 73.2% 85.4%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.81e-01 78.4% 93.3%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 39.0 3.26e-01 70.1% 86.7%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.56 42.0 3.59e-01 82.5% 78.7%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 32.0 3.91e-01 94.8% 93.2%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 40.0 3.58e-01 77.3% 63.4%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.50e-01 75.3% 59.9%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 42.0 3.55e-01 82.5% 68.7%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.55 38.0 3.66e-01 71.1% 68.8%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.58e-01 78.4% 69.0%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.03e-01 78.4% 54.4%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 38.0 3.20e-01 73.2% 61.0%
1w4bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.33e-01 88.7% 92.5%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.53 40.0 3.83e-01 84.5% 69.6%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 37.0 3.29e-01 75.3% 59.1%
1e25A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 38.0 2.81e-01 78.4% 93.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.91e-01 88.7% 98.5%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 33.0 3.31e-01 96.9% 62.1%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 3.22e-01 75.3% 59.5%
1uv4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 3.13e-01 96.9% 89.7%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.37e-01 75.3% 84.0%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.50 35.0 3.61e-01 74.2% 80.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 3.93e-01 90.7% 96.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4137393 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.87 83.0 6.94e-01 100.0% 80.0%
3802643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 48.0 4.92e-01 78.4% 69.5%
3602244 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 58.0 5.05e-01 89.7% 82.6%
4026008 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 50.0 5.30e-01 82.5% 87.1%
3314422 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 47.0 5.35e-01 79.4% 100.0%
4161565 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.65 46.0 4.70e-01 74.2% 80.0%
4058654 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.65 45.0 4.51e-01 74.2% 70.7%
4157358 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 42.0 4.62e-01 75.3% 83.3%
3603056 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 43.0 4.75e-01 72.2% 89.3%
4024649 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 43.0 4.45e-01 75.3% 75.6%
4262169 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 45.0 4.57e-01 75.3% 77.4%
3235699 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 48.0 4.59e-01 83.5% 74.8%
4935472 330.4.1.0 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.60 40.0 4.53e-01 74.2% 94.3%
3780194 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 48.0 3.59e-01 86.6% 35.1%
3697999 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 43.0 3.18e-01 75.3% 35.7%
4245955 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.59 48.0 4.31e-01 85.6% 67.7%
3565104 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 46.0 2.71e-01 84.5% 71.1%
4119536 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.59 47.0 4.29e-01 85.6% 67.7%
4507935 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.59 48.0 4.46e-01 87.6% 92.7%
3685150 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.59 49.0 4.09e-01 89.7% 59.4%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 42.0 4.61e-01 87.6% 100.0%
3594555 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 42.0 3.65e-01 79.4% 88.7%
4122231 216.1.1.6 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UFC1 0.57 42.0 3.60e-01 79.4% 86.1%
3177460 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.56 41.0 4.14e-01 78.4% 90.0%
4297447 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 47.0 4.18e-01 92.8% 64.3%
4927927 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.56 40.0 3.85e-01 74.2% 67.3%
3389668 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.56 39.0 3.95e-01 73.2% 81.0%
3845291 220.1.1.119 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.56 39.0 2.97e-01 73.2% 35.7%
3259900 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 40.0 2.49e-01 74.2% 19.6%
3992069 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.43e-01 80.4% 64.4%
3663326 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.55 33.0 3.28e-01 72.2% 56.2%
4338934 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 33.0 3.90e-01 96.9% 89.2%
3788985 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.41e-01 73.2% 75.9%
3227570 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.54 41.0 3.47e-01 80.4% 76.5%
4556738 7503.1.1.1 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.54 40.0 3.07e-01 80.4% 95.5%
3630687 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.64e-01 82.5% 86.7%
3723171 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.59e-01 82.5% 90.0%
3740379 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 28.0 3.36e-01 78.4% 80.0%
4954915 2003.1.1.386 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_C 0.53 44.0 2.97e-01 92.8% 70.8%
5052436 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 38.0 4.13e-01 90.7% 91.3%
2125196 2485.2.1.1 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.52 43.0 4.30e-01 91.8% 89.9%
5011114 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.52 43.0 3.22e-01 92.8% 98.1%
3709115 220.1.1.175 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31 0.52 38.0 2.93e-01 76.3% 78.9%
3601898 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.23e-01 78.4% 92.7%
3520574 5.1.2.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.51 35.0 2.73e-01 73.2% 30.2%
3595953 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.18e-01 80.4% 93.0%
3620446 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.39e-01 78.4% 73.6%
3688914 283.1.1.4 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.51 46.0 4.06e-01 100.0% 97.1%
3727780 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.51 42.0 2.91e-01 89.7% 31.7%
4888978 2485.2.1.1 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.51 42.0 4.10e-01 91.8% 89.6%
134040 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.50 35.0 3.61e-01 74.2% 80.0%
3597494 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 41.0 3.04e-01 93.8% 74.5%
4081797 3860.1.1.158 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.50 45.0 3.96e-01 100.0% 76.6%
D3 medium residues 14-28_113-166
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 40.0 3.97e-01 100.0% 53.4%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 37.0 3.16e-01 100.0% 38.1%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.81e-01 95.7% 59.3%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.57 34.0 2.55e-01 98.6% 20.6%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.57 48.0 3.36e-01 95.7% 46.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 34.0 3.83e-01 98.6% 89.4%
2jz4A01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.55 35.0 2.77e-01 82.6% 29.7%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 3.69e-01 91.3% 58.7%
2gx9A00 3.30.420.330 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Influenza virus non-structural protein, effector domain 0.55 42.0 3.44e-01 87.0% 45.2%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.59e-01 78.3% 79.4%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 38.0 2.83e-01 73.9% 69.3%
1j4sA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 47.0 3.68e-01 100.0% 72.5%
3iwgA01 3.40.630.80 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.53 42.0 3.49e-01 100.0% 47.7%
3c1aA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 39.0 3.16e-01 82.6% 42.1%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 4.07e-01 87.0% 92.3%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 32.0 3.74e-01 76.8% 100.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3663850 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.67 47.0 4.24e-01 81.2% 53.7%
3252821 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 39.0 3.34e-01 100.0% 37.3%
3624498 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 35.0 2.88e-01 98.6% 28.8%
3427891 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 38.0 2.46e-01 100.0% 13.2%
3212583 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.59 37.0 3.35e-01 78.3% 44.0%
5027131 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.59 36.0 3.85e-01 100.0% 70.0%
4608279 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 41.0 4.27e-01 81.2% 80.0%
3676212 708.1.1.8 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 0.57 46.0 3.89e-01 88.4% 72.2%
3928839 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 36.0 2.82e-01 98.6% 28.4%
5031305 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 4.22e-01 82.6% 83.1%
3281942 222.1.1.24 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA 0.55 46.0 3.56e-01 100.0% 64.6%
3586469 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.54 35.0 3.39e-01 97.1% 54.1%
3655876 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.54 46.0 2.67e-01 100.0% 11.0%
3815898 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.54 47.0 3.77e-01 97.1% 61.5%
2394466 4.8.1.29 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SH3_AEBP2_C 0.54 38.0 3.52e-01 73.9% 64.0%
3857730 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.53 45.0 3.59e-01 97.1% 54.5%
3740996 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.52 45.0 3.68e-01 100.0% 71.9%
3946613 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.52 33.0 2.54e-01 95.7% 24.3%
5028273 11.18.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in metallo-endopeptidase BACOVA_00663 › N-terminal domain in metallo-endopeptidase BACOVA_00663 0.52 38.0 3.41e-01 79.7% 92.0%
3436607 2007.5.1.20 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase,PMR5N 0.52 44.0 2.81e-01 95.7% 30.0%
3801119 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 43.0 2.86e-01 100.0% 24.8%
3400196 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.50 41.0 2.66e-01 95.7% 20.5%
3991186 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.50 36.0 3.09e-01 95.7% 46.1%
3501741 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.50 34.0 3.51e-01 97.1% 80.0%
3855974 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.50 33.0 3.27e-01 98.6% 62.7%