←Back to structures

OQ817837.1__WNO49342.1__X__00046

Bact-Vir

OQ817837.1__WNO49342.1__X__00046

Identity

Accession:
OQ817837 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Achromobacter_phage_kwar_LB4

TaxID: 3043589

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 60-108
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.65 57.0 3.52e-01 100.0% 17.4%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 47.0 2.89e-01 100.0% 89.4%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.21e-01 98.0% 83.1%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 2.97e-01 75.5% 38.4%
4okoA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 41.0 2.68e-01 91.8% 79.0%
1wduB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.54 43.0 2.91e-01 95.9% 92.2%
5vogA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 3.10e-01 98.0% 61.4%
1u6mA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.03e-01 98.0% 95.8%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.54e-01 100.0% 66.3%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.55e-01 100.0% 71.3%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.50 39.0 2.41e-01 100.0% 20.2%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 2.44e-01 83.7% 22.4%
3eo7A02 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 40.0 2.62e-01 91.8% 63.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385422 109.4.1.337 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ipi1_N 0.59 44.0 2.52e-01 85.7% 20.5%
4950221 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 48.0 3.90e-01 100.0% 57.4%
3938065 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.41e-01 100.0% 93.3%
4932305 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.37e-01 100.0% 36.5%
3587898 101.1.2.214 ↗ alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.57 49.0 3.74e-01 100.0% 53.3%
4948012 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 3.69e-01 100.0% 53.0%
5064203 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.00e-01 100.0% 74.4%
3614612 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.56 44.0 2.97e-01 98.0% 40.8%
5054938 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.56 45.0 3.57e-01 100.0% 52.1%
4941856 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 44.0 3.61e-01 100.0% 54.5%
5031481 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 45.0 3.63e-01 100.0% 58.2%
5078667 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 44.0 3.50e-01 100.0% 50.0%
4971464 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 45.0 3.54e-01 100.0% 56.5%
4928934 6049.1.1.0 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.54 43.0 3.36e-01 100.0% 58.5%
3283775 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.54 43.0 3.09e-01 100.0% 35.6%
4982703 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.53 40.0 3.55e-01 95.9% 68.9%
4958611 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.52 41.0 2.93e-01 100.0% 31.4%
3282515 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 40.0 2.97e-01 100.0% 36.0%
5039090 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.51 40.0 3.42e-01 100.0% 59.0%
3393691 383.1.1.0 ↗ few secondary structure elements › Defensin-like › Defensin-related › Defensin-related 0.51 36.0 3.47e-01 81.6% 67.3%
D2 medium residues 1-58
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 37.0 3.64e-01 75.9% 42.9%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.67 36.0 3.81e-01 79.3% 58.8%
2kt2A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 34.0 3.26e-01 75.9% 40.6%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.64 31.0 3.00e-01 72.4% 36.2%
5koxA02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 32.0 2.78e-01 79.3% 33.7%
2ztgA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 44.0 2.89e-01 79.3% 77.3%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 30.0 2.69e-01 74.1% 36.9%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.56 35.0 3.08e-01 87.9% 42.0%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.56 32.0 2.82e-01 79.3% 31.2%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.54 33.0 2.75e-01 96.6% 31.5%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.13e-01 84.5% 73.0%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.25e-01 86.2% 78.9%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.52 31.0 2.60e-01 74.1% 28.7%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.52 35.0 3.18e-01 70.7% 51.3%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.05e-01 74.1% 85.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944438 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.69 36.0 3.88e-01 74.1% 58.0%
279560 304.115.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in DAHP synthase › Ferredoxin-like domain in DAHP synthase › DAHP_snth_FXD 0.64 33.0 3.22e-01 79.3% 39.7%
3309598 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.59 35.0 3.10e-01 70.7% 41.2%
3198960 304.20.1.2 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.58 39.0 2.87e-01 84.5% 25.0%
3569969 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.57 35.0 2.23e-01 91.4% 13.2%
3627709 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 42.0 3.02e-01 82.8% 30.5%
3506749 633.21.1.23 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.54 42.0 3.01e-01 84.5% 100.0%
5055279 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.54 40.0 2.75e-01 81.0% 42.0%
3479534 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 40.0 2.50e-01 87.9% 33.8%
4874840 704.1.1.1 ↗ beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › CoV_nucleocap 0.53 40.0 3.66e-01 87.9% 59.3%
2640297 808.1.1.1 ↗ a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap 0.53 40.0 3.33e-01 87.9% 44.0%
4443872 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.24e-01 93.1% 79.3%
3988062 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 37.0 3.24e-01 75.9% 77.8%