←Back to structures

OQ817838.1__WNO48841.1__X__00058

Bact-Vir

OQ817838.1__WNO48841.1__X__00058

Identity

Accession:
OQ817838 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Steinhofvirus› Achromobacter_phage_maay_LB1

TaxID: 3043590

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.81 59.0 4.36e-01 76.9% 37.9%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 58.0 5.03e-01 76.9% 67.9%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 55.0 5.12e-01 73.1% 59.4%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.78 55.0 4.09e-01 73.1% 32.5%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.76 59.0 5.76e-01 82.7% 80.7%
3b40A02 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.75 48.0 4.67e-01 75.0% 58.6%
6o15A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.73 53.0 3.37e-01 76.9% 81.5%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 54.0 4.15e-01 78.8% 42.5%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.72 52.0 3.42e-01 76.9% 27.2%
3kcuD00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.68 56.0 3.60e-01 90.4% 94.8%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.68 54.0 4.93e-01 86.5% 66.2%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.68 53.0 4.71e-01 84.6% 83.6%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.68 46.0 4.95e-01 71.2% 82.2%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.68 55.0 4.97e-01 96.2% 96.1%
3brcA02 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.67 53.0 4.05e-01 86.5% 92.5%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 50.0 3.71e-01 82.7% 80.9%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.64 48.0 4.54e-01 84.6% 96.9%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 49.0 4.57e-01 82.7% 75.0%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.64 49.0 4.18e-01 90.4% 51.2%
2yfqB01 1.10.8.1210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 46.0 4.64e-01 86.5% 76.9%
3ce9A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.64 54.0 3.71e-01 96.2% 41.2%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 55.0 4.85e-01 100.0% 71.1%
2wa5A01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.59 47.0 3.83e-01 90.4% 51.0%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 52.0 5.02e-01 98.1% 89.8%
3s79A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 50.0 2.90e-01 100.0% 13.5%
1nv8B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 44.0 4.08e-01 90.4% 88.7%
4wsoA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 41.0 2.71e-01 82.7% 26.9%
2m35A00 1.10.60.50 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › 0.54 40.0 4.03e-01 88.5% 86.5%
7zhgO01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.50 37.0 3.53e-01 86.5% 98.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3914715 605.1.1.235 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › BicD 0.86 72.0 6.26e-01 90.4% 81.3%
3221933 3722.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain 0.85 78.0 4.89e-01 100.0% 23.2%
3596488 3737.1.1.0 ↗ alpha duplicates or obligate multimers › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats 0.82 57.0 4.25e-01 73.1% 34.4%
3767056 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.79 66.0 4.33e-01 96.2% 22.9%
4602761 105.2.1.91 ↗ alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › SPICE 0.78 68.0 5.08e-01 100.0% 44.6%
None — 0.76 52.0 4.11e-01 82.7% 35.2%
3685214 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.73 60.0 5.04e-01 88.5% 78.8%
3724315 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 54.0 3.77e-01 78.8% 27.3%
4992073 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 54.0 3.61e-01 82.7% 26.8%
2651169 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 50.0 3.72e-01 73.1% 51.5%
3497102 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.71 59.0 3.60e-01 90.4% 16.1%
3748535 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.71 58.0 3.95e-01 90.4% 26.5%
3268369 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.71 58.0 4.68e-01 88.5% 50.5%
3975557 3782.1.1.0 ↗ a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related 0.71 50.0 4.65e-01 75.0% 84.6%
4003837 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.69 59.0 4.68e-01 94.2% 48.0%
3637243 5094.1.1.3 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › DUF2458 0.69 53.0 3.94e-01 82.7% 50.8%
4120246 3664.1.1.1 ↗ alpha arrays › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C › SASP 0.68 51.0 5.05e-01 80.8% 92.7%
3729821 3191.1.1.1 ↗ alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR 0.67 53.0 3.66e-01 82.7% 54.2%
5056906 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.67 55.0 3.27e-01 90.4% 46.0%
3963134 605.4.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 0.67 59.0 4.73e-01 100.0% 89.5%
3183576 3985.1.1.1 ↗ alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM 0.66 49.0 4.24e-01 78.8% 73.8%
3840055 1180.1.1.1 ↗ alpha bundles › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › FliP 0.65 50.0 4.24e-01 84.6% 62.4%
4928145 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.64 47.0 4.14e-01 80.8% 61.3%
4970770 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.63 55.0 4.13e-01 100.0% 80.0%
4032135 632.2.1.39 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF4355 0.63 56.0 4.86e-01 100.0% 66.3%
3176029 192.13.1.0 ↗ alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like 0.62 46.0 3.99e-01 78.8% 56.2%
4934139 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.62 54.0 5.22e-01 100.0% 90.0%
3542362 389.1.1.127 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ANATO 0.62 46.0 4.69e-01 78.8% 84.0%
3996596 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.55 43.0 4.11e-01 100.0% 92.9%