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OQ817842.1__WNO49228.1__X__00052

Bact-Vir

OQ817842.1__WNO49228.1__X__00052

Identity

Accession:
OQ817842 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Steinhofvirus› Achromobacter_phage_ewik_TL4

TaxID: 3076823

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
Domain cluster: rep: MH729379.1__AXY81274.1__AVP_158__00158__D2-65
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.87 64.0 5.51e-01 77.0% 56.7%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.66 58.0 4.35e-01 98.4% 60.0%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.64 47.0 4.07e-01 82.0% 75.0%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.62 54.0 3.95e-01 98.4% 53.3%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.62 47.0 4.09e-01 83.6% 72.9%
2pjhB02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 47.0 3.97e-01 85.2% 68.9%
1qcsA02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 48.0 4.04e-01 90.2% 81.9%
2jv2A00 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 44.0 4.12e-01 82.0% 84.2%
1cr5B02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 47.0 4.08e-01 90.2% 88.4%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 45.0 4.20e-01 86.9% 94.8%
1aipE03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 4.12e-01 73.8% 96.4%
1vw4X00 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.56 39.0 3.89e-01 75.4% 73.4%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.56 41.0 2.85e-01 82.0% 51.1%
2hgaA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 41.0 3.73e-01 83.6% 84.7%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 40.0 3.56e-01 80.3% 85.6%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.86e-01 83.6% 98.7%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.54 42.0 3.14e-01 90.2% 92.0%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.53 41.0 3.32e-01 85.2% 88.7%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 45.0 3.52e-01 100.0% 66.9%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 39.0 3.61e-01 80.3% 96.2%
4xl1E01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 2.81e-01 75.4% 94.8%
4g7wA00 2.40.30.280 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Vibrio phage CTXphi pIII, N-terminal N1 domain 0.51 40.0 3.49e-01 88.5% 82.7%
4an6B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 37.0 2.83e-01 82.0% 90.1%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 4.06e-01 100.0% 83.3%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.41e-01 86.9% 83.3%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 2.96e-01 78.7% 39.7%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 44.0 3.09e-01 100.0% 34.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.90 84.0 6.97e-01 100.0% 61.0%
4032331 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.89 81.0 6.45e-01 98.4% 61.7%
3838774 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.89 81.0 6.62e-01 100.0% 57.1%
4554209 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.88 82.0 6.55e-01 100.0% 57.3%
4421311 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.87 81.0 6.49e-01 100.0% 59.1%
4083034 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.87 80.0 6.48e-01 100.0% 64.5%
4254576 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.87 77.0 6.43e-01 95.1% 63.0%
4674798 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.86 80.0 6.41e-01 100.0% 61.8%
3970095 3430.1.1.0 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain 0.85 78.0 6.22e-01 100.0% 59.1%
3964437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.83 77.0 6.17e-01 100.0% 58.2%
4486406 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.83 76.0 6.14e-01 100.0% 59.1%
4186740 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.79 57.0 5.21e-01 77.0% 88.7%
4328611 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.79 56.0 4.90e-01 75.4% 84.4%
4138417 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.74 56.0 5.12e-01 82.0% 91.3%
4079831 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.73 57.0 5.14e-01 85.2% 87.1%
4239904 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.72 55.0 4.95e-01 83.6% 85.9%
4096819 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.71 53.0 4.75e-01 80.3% 85.9%
3386644 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.71 55.0 4.96e-01 85.2% 87.1%
4956150 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 54.0 5.64e-01 85.2% 92.7%
4317197 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.70 52.0 4.69e-01 80.3% 84.5%
4544250 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.70 52.0 4.74e-01 82.0% 85.7%
3499701 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.70 58.0 5.33e-01 95.1% 100.0%
3954037 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.69 51.0 4.84e-01 80.3% 100.0%
3959747 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.68 50.0 4.77e-01 80.3% 98.7%
4983067 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.66 50.0 5.35e-01 83.6% 98.0%
3964035 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.65 50.0 4.58e-01 85.2% 90.4%
4943792 229.1.1.12 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › AAA 0.65 49.0 4.47e-01 83.6% 80.0%
4982797 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.64 56.0 4.23e-01 98.4% 59.3%
5045457 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.64 48.0 4.41e-01 83.6% 80.0%
3921387 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.63 50.0 4.32e-01 88.5% 86.0%
3254376 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.63 46.0 4.56e-01 78.7% 98.4%
3679539 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.63 51.0 4.68e-01 90.2% 91.3%
4928877 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.62 47.0 4.30e-01 83.6% 81.2%
5042185 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.62 49.0 4.53e-01 86.9% 86.3%
4086239 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 46.0 4.80e-01 82.0% 90.9%
4994054 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.60 48.0 4.44e-01 90.2% 88.7%
4978260 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.60 48.0 4.44e-01 90.2% 85.0%
3492327 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.59 48.0 4.05e-01 90.2% 81.9%
4927348 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.59 47.0 4.46e-01 90.2% 93.3%
3636770 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.59 48.0 4.06e-01 91.8% 82.9%
5050555 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.58 47.0 4.45e-01 90.2% 90.7%
165655 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.58 44.0 4.12e-01 82.0% 84.2%
3257012 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.58 47.0 4.10e-01 90.2% 86.3%
3406946 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.58 47.0 4.01e-01 90.2% 89.0%
3598454 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.57 46.0 3.92e-01 90.2% 93.3%
3757701 382.1.1.3 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.57 42.0 3.99e-01 83.6% 67.5%
3630527 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 47.0 4.61e-01 93.4% 92.3%
4029158 229.1.1.8 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › UFD1_N2 0.56 44.0 4.13e-01 90.2% 95.0%
3685006 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.56 45.0 3.67e-01 90.2% 83.3%
5053342 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.55 44.0 4.16e-01 90.2% 90.7%
4991007 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.55 44.0 4.17e-01 90.2% 94.6%
5049603 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.55 40.0 3.46e-01 78.7% 81.9%
5035333 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.54 39.0 3.40e-01 78.7% 66.0%
4075278 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 38.0 3.26e-01 82.0% 99.1%
3243073 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 39.0 3.51e-01 85.2% 61.2%
3574971 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 37.0 4.01e-01 82.0% 100.0%