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OQ818670.1__WGV38318.1__SWJM03_00042__00042

Bact-Vir

OQ818670.1__WGV38318.1__SWJM03_00042__00042

Identity

Accession:
OQ818670 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Berlinvirus› Salmonella_phage_SWJM-03

TaxID: 3043509

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-119
PDB
Domain cluster: rep: NC_027397.1__YP_009153046.1__ACQ41_gp20__00020__D9-117
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03906.21 best Phage_T7_tail 124.1 5.00e-36 100.0% 84.0%
D2 high residues 509-645
PDB
Domain cluster: rep: NC_021532.1__YP_008125992.1__M610_gp021__00021__D1092-1234
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 41.0 4.83e-01 100.0% 91.5%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 43.0 4.97e-01 100.0% 92.9%
3fq4B01 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.64 43.0 4.62e-01 99.3% 80.2%
6oodA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.60 44.0 4.35e-01 76.6% 98.0%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 54.0 4.46e-01 100.0% 63.6%
1zxqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 31.0 3.75e-01 97.8% 80.0%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 4.41e-01 100.0% 85.5%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 5.17e-01 99.3% 100.0%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.56 42.0 4.25e-01 77.4% 97.0%
6m3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 3.92e-01 85.4% 78.3%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 39.0 4.01e-01 78.1% 76.3%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.54 41.0 3.80e-01 81.0% 97.8%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 32.0 3.97e-01 81.0% 100.0%
4fy1100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 4.16e-01 100.0% 77.9%
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.54 49.0 4.40e-01 100.0% 90.5%
1ohfA02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.78e-01 100.0% 87.8%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.54 39.0 3.96e-01 76.6% 97.1%
4xurA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 48.0 4.59e-01 99.3% 100.0%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.34e-01 100.0% 89.7%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 3.65e-01 100.0% 79.0%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.52 38.0 3.62e-01 100.0% 64.2%
2pvzB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 38.0 3.42e-01 78.1% 57.8%
5jpnC01 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.51 36.0 3.66e-01 91.2% 73.7%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 4.26e-01 97.8% 87.2%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.88e-01 98.5% 100.0%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 30.0 3.61e-01 71.5% 92.9%
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 38.0 3.30e-01 98.5% 50.5%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 40.0 3.40e-01 83.2% 90.9%
1swgC00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 37.0 3.87e-01 76.6% 100.0%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 46.0 3.84e-01 98.5% 99.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940074 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 38.0 4.50e-01 90.5% 84.2%
4937593 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.62 47.0 4.03e-01 78.8% 96.8%
4853112 708.1.1.2 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.59 33.0 3.99e-01 79.6% 84.1%
4013361 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 43.0 4.05e-01 78.8% 74.1%
3926092 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 45.0 4.24e-01 91.2% 68.5%
4377115 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.57 48.0 2.91e-01 92.7% 27.4%
5028178 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.57 40.0 3.53e-01 72.3% 97.6%
5014947 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 3.82e-01 100.0% 64.0%
875 9.13.1.3 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.56 42.0 4.25e-01 77.4% 97.0%
3720202 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 42.0 4.09e-01 78.8% 73.2%
5033505 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 4.07e-01 97.8% 85.5%
901 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.53 40.0 3.65e-01 79.6% 92.6%
3938893 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 36.0 3.32e-01 91.2% 50.8%
4117582 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.53 34.0 3.53e-01 96.4% 69.6%
3389074 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 38.0 3.66e-01 91.2% 65.2%
3232754 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 35.0 3.64e-01 73.7% 72.0%
4024633 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 39.0 3.62e-01 78.8% 78.9%
3971633 5084.6.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.52 42.0 3.55e-01 88.3% 80.2%
3480782 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 37.0 3.65e-01 99.3% 69.0%
3514135 5084.1.1.19 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › BCSC_C 0.52 36.0 3.38e-01 70.8% 87.9%
3470234 11.1.6.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA 0.51 42.0 4.18e-01 97.8% 83.4%
4017709 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.50 37.0 3.37e-01 100.0% 55.3%
4075543 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.50 40.0 3.13e-01 84.7% 99.0%
5080816 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 4.18e-01 99.3% 88.1%
D3 medium residues 158-272
PDB
Domain cluster: representative