←Back to structures
OQ818705.1__WJN64578.1__Erwinia_phage_Pastis_00027__00027
Bact-VirOQ818705.1__WJN64578.1__Erwinia_phage_Pastis_00027__00027
Identity
- Accession:
- OQ818705 ↗
- Kingdom:
- phage
Quality
85.8
mean pLDDT
Taxonomy
TaxID: 3056489
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-75
Domain cluster:
rep: JGI24723J26617_10000007_prodigal-single.1__X__X__00368__D2-60
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pzdA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.69 | 52.0 | 4.45e-01 | 79.7% | 68.7% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.65 | 34.0 | 3.82e-01 | 98.6% | 64.3% |
| 1e50B00 | 2.40.250.10 | Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit | 0.64 | 50.0 | 4.17e-01 | 85.1% | 82.3% |
| 5akpA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.64 | 49.0 | 4.06e-01 | 82.4% | 73.6% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 37.0 | 4.08e-01 | 93.2% | 71.7% |
| 1ztuA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 49.0 | 3.84e-01 | 82.4% | 60.3% |
| 3gm8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 50.0 | 4.51e-01 | 97.3% | 63.8% |
| 5m8cB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 45.0 | 2.92e-01 | 78.4% | 90.7% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 47.0 | 3.86e-01 | 89.2% | 45.1% |
| 4wj7D00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 45.0 | 3.72e-01 | 78.4% | 83.7% |
| 3hlzB01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.60 | 48.0 | 3.97e-01 | 90.5% | 61.4% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 49.0 | 4.20e-01 | 94.6% | 58.4% |
| 3nhqA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 45.0 | 3.86e-01 | 82.4% | 74.8% |
| 5hsqA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 45.0 | 3.74e-01 | 82.4% | 65.9% |
| 3hduA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 49.0 | 3.89e-01 | 95.9% | 65.8% |
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 4.40e-01 | 93.2% | 73.9% |
| 2bg1A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 43.0 | 2.85e-01 | 81.1% | 77.9% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.57 | 42.0 | 3.39e-01 | 78.4% | 66.9% |
| 3eqeA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 48.0 | 3.72e-01 | 93.2% | 62.2% |
| 2qiyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 49.0 | 4.05e-01 | 100.0% | 94.0% |
| 2vzsA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 49.0 | 4.42e-01 | 100.0% | 74.3% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.55 | 41.0 | 3.21e-01 | 93.2% | 35.5% |
| 4aqzA00 | 2.60.40.3470 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 3.76e-01 | 93.2% | 73.9% |
| 1h6eA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.55 | 47.0 | 4.18e-01 | 94.6% | 81.9% |
| 1sil000 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 45.0 | 2.94e-01 | 95.9% | 87.4% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 41.0 | 3.35e-01 | 82.4% | 90.8% |
| 3fwlA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 41.0 | 2.66e-01 | 85.1% | 68.5% |
| 7z0sE02 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.54 | 45.0 | 2.97e-01 | 93.2% | 85.8% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 46.0 | 4.04e-01 | 94.6% | 80.0% |
| 3rnsA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 46.0 | 4.13e-01 | 94.6% | 87.0% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 38.0 | 3.50e-01 | 77.0% | 92.8% |
| 2pfwA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 45.0 | 3.94e-01 | 94.6% | 77.5% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.52 | 41.0 | 3.00e-01 | 85.1% | 42.9% |
| 2jpiA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 38.0 | 3.53e-01 | 79.7% | 63.5% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 3.54e-01 | 94.6% | 76.5% |
| 3rqwA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 43.0 | 3.34e-01 | 100.0% | 52.1% |
| 1ei5A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 42.0 | 2.87e-01 | 95.9% | 76.9% |
| 4uozA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 40.0 | 4.28e-01 | 93.2% | 100.0% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 42.0 | 2.89e-01 | 95.9% | 72.1% |
| 4nzfD02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 43.0 | 4.07e-01 | 95.9% | 85.6% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 39.0 | 3.39e-01 | 89.2% | 50.8% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 45.0 | 3.67e-01 | 100.0% | 85.6% |
| 1cc1L00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.50 | 43.0 | 2.64e-01 | 94.6% | 79.9% |
| 5aa5E00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.50 | 42.0 | 2.53e-01 | 93.2% | 81.2% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3514856 | 1181.1.1.0 ↗ | 0.75 | 47.0 | 4.74e-01 | 81.1% | 62.7% | |
| 4988948 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.68 | 54.0 | 4.46e-01 | 82.4% | 68.3% |
| 4614514 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.67 | 52.0 | 4.63e-01 | 82.4% | 80.0% |
| 3879684 | 223.2.1.46 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M | 0.65 | 50.0 | 3.84e-01 | 82.4% | 49.7% |
| 4882206 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.65 | 50.0 | 4.22e-01 | 82.4% | 73.6% |
| 3323226 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.63 | 51.0 | 4.03e-01 | 87.8% | 68.0% |
| 3295586 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.62 | 50.0 | 3.86e-01 | 87.8% | 61.2% |
| 3704834 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.61 | 52.0 | 4.82e-01 | 93.2% | 80.0% |
| 3479988 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 49.0 | 3.57e-01 | 85.1% | 72.1% |
| 4935741 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.61 | 47.0 | 4.13e-01 | 90.5% | 54.8% |
| 3693958 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.60 | 43.0 | 3.09e-01 | 77.0% | 56.5% |
| 3705153 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 46.0 | 3.70e-01 | 81.1% | 63.0% |
| 3176053 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 43.0 | 3.56e-01 | 77.0% | 68.5% |
| 3914585 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 43.0 | 3.81e-01 | 77.0% | 72.4% |
| 3639869 | 223.2.1.30 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N | 0.59 | 45.0 | 3.49e-01 | 81.1% | 49.4% |
| 3927525 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.58 | 46.0 | 3.21e-01 | 87.8% | 29.8% |
| 3667522 | 223.2.1.31 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 | 0.58 | 49.0 | 3.67e-01 | 91.9% | 78.3% |
| 3544563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 43.0 | 3.75e-01 | 77.0% | 72.4% |
| 3907293 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.58 | 42.0 | 3.73e-01 | 77.0% | 72.4% |
| 3236743 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.58 | 47.0 | 3.54e-01 | 93.2% | 38.9% |
| 4554156 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.57 | 47.0 | 3.27e-01 | 91.9% | 68.8% |
| 3242741 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.57 | 49.0 | 3.35e-01 | 94.6% | 28.5% |
| 3201815 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 49.0 | 4.55e-01 | 97.3% | 83.2% |
| 3512817 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.57 | 42.0 | 3.55e-01 | 78.4% | 80.8% |
| 3970193 | 319.3.1.0 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ | 0.57 | 47.0 | 4.34e-01 | 98.6% | 71.6% |
| 3623922 | 331.10.2.6 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › BBS7_pf | 0.56 | 41.0 | 3.97e-01 | 78.4% | 76.5% |
| 3392216 | 223.2.1.31 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 | 0.56 | 51.0 | 3.75e-01 | 100.0% | 65.3% |
| 4004064 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 43.0 | 3.54e-01 | 82.4% | 57.0% |
| 3188329 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.56 | 47.0 | 4.47e-01 | 97.3% | 77.8% |
| 3244742 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.56 | 47.0 | 3.18e-01 | 94.6% | 30.7% |
| 4971123 | 304.136.1.0 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain | 0.56 | 46.0 | 4.15e-01 | 97.3% | 85.5% |
| 3484746 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.56 | 41.0 | 3.61e-01 | 78.4% | 73.6% |
| 3602276 | 881.4.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 | 0.55 | 45.0 | 3.74e-01 | 91.9% | 50.4% |
| 3421408 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.55 | 42.0 | 3.52e-01 | 86.5% | 46.7% |
| 4992460 | 222.1.1.43 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › DUF2103 | 0.54 | 36.0 | 3.45e-01 | 79.7% | 56.8% |
| 3601966 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.54 | 41.0 | 3.53e-01 | 79.7% | 66.1% |
| 3937762 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.54 | 43.0 | 3.17e-01 | 89.2% | 40.0% |
| 3344476 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.53 | 44.0 | 3.69e-01 | 93.2% | 76.3% |
| 2582102 | 3338.2.1.2 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin | 0.53 | 47.0 | 3.96e-01 | 100.0% | 85.3% |
| 5016545 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.53 | 39.0 | 3.11e-01 | 79.7% | 63.9% |
| 4599893 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.53 | 43.0 | 2.96e-01 | 90.5% | 62.9% |
| 3701279 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.53 | 39.0 | 3.67e-01 | 81.1% | 68.4% |
| 3500063 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.39e-01 | 91.9% | 58.7% |
| 3231836 | 220.1.1.176 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 | 0.52 | 38.0 | 3.05e-01 | 78.4% | 56.0% |
| 5020831 | 881.4.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 | 0.52 | 43.0 | 3.71e-01 | 94.6% | 58.4% |
| 4405873 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.52 | 39.0 | 3.50e-01 | 85.1% | 75.7% |
| 3962922 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 47.0 | 3.60e-01 | 100.0% | 77.6% |
| 3615406 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 3.51e-01 | 79.7% | 74.0% |
| 4040016 | 814.1.1.2 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase | 0.52 | 43.0 | 3.56e-01 | 97.3% | 64.8% |
| 3232235 | 390.1.1.7 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 | 0.51 | 42.0 | 3.74e-01 | 94.6% | 99.1% |
| 3255190 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 39.0 | 3.62e-01 | 87.8% | 65.3% |
| 3584223 | 5.1.5.64 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 | 0.50 | 40.0 | 2.59e-01 | 95.9% | 22.5% |
| 3800961 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 40.0 | 2.60e-01 | 97.3% | 19.9% |