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OQ828306.1__WMX18713.1__YpEc11_01__00001

Bact-Vir

OQ828306.1__WMX18713.1__YpEc11_01__00001

Identity

Accession:
OQ828306 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Helsettvirus› Yersinia_phage_vB_YpEc11

TaxID: 3056113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-106
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 52.0 3.49e-01 100.0% 60.0%
5d6oA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 45.0 3.05e-01 88.0% 33.5%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 28.0 3.02e-01 100.0% 57.4%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 46.0 3.94e-01 100.0% 69.3%
3nqnA00 3.30.530.70 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 0.51 44.0 3.65e-01 96.4% 55.6%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 44.0 4.02e-01 97.6% 76.1%
1na6A01 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 39.0 3.11e-01 81.9% 81.3%
3loyA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 4.01e-01 100.0% 72.8%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.51 37.0 2.63e-01 77.1% 78.5%
5w8oA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 37.0 2.58e-01 81.9% 63.3%
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.50 38.0 3.46e-01 79.5% 95.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021368 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.61 40.0 2.65e-01 92.8% 17.2%
3227846 7579.1.1.70 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 0.60 41.0 2.79e-01 72.3% 30.1%
4993562 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 49.0 4.62e-01 98.8% 74.3%
4595466 3572.1.1.2 ↗ a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.58 43.0 3.77e-01 79.5% 74.4%
3410497 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.57 50.0 3.21e-01 100.0% 31.9%
4987033 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.56 49.0 4.60e-01 100.0% 92.4%
3625971 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.56 48.0 4.05e-01 100.0% 56.6%
3471287 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.47e-01 85.5% 70.3%
3621277 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 3.95e-01 100.0% 72.3%
5060907 2003.1.1.386 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_C 0.54 44.0 2.95e-01 92.8% 35.5%
None — 0.54 46.0 3.26e-01 100.0% 74.0%
3168711 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 41.0 3.38e-01 89.2% 43.3%
3891434 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.53 45.0 3.92e-01 100.0% 75.0%
None — 0.52 45.0 3.21e-01 97.6% 79.6%
3913149 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 45.0 3.79e-01 100.0% 67.3%
3634173 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 44.0 3.74e-01 100.0% 71.0%
None — 0.52 44.0 3.15e-01 98.8% 79.3%
138516 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.52 45.0 4.04e-01 100.0% 70.2%
4975913 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.52 42.0 3.76e-01 90.4% 63.3%
4279088 109.21.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.52 45.0 2.65e-01 100.0% 13.8%
4961743 11.1.1.1434 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26682 0.51 43.0 3.62e-01 95.2% 90.6%
3484453 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.51 45.0 2.81e-01 100.0% 32.5%
207 1.1.11.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › EcoRII-N 0.51 39.0 3.10e-01 81.9% 80.8%
3892129 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.51 45.0 3.81e-01 100.0% 75.0%
4074775 5.1.5.143 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › TPR_Sec16 0.51 44.0 2.59e-01 100.0% 13.6%
3555728 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 44.0 2.87e-01 100.0% 26.4%
None — 0.50 44.0 2.59e-01 100.0% 14.1%
3651779 109.21.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.50 44.0 2.57e-01 100.0% 13.5%