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OQ834252.1__WIR86174.1__CRP12_000043__00043

Bact-Vir

OQ834252.1__WIR86174.1__CRP12_000043__00043

Identity

Accession:
OQ834252 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Riemerella_phage_vB_RanS_CRP12

TaxID: 3043503

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-87
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 63.0 6.11e-01 95.3% 95.9%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.74 52.0 3.20e-01 73.4% 94.8%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 63.0 5.83e-01 100.0% 91.5%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 61.0 5.04e-01 100.0% 94.0%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 59.0 5.58e-01 98.4% 91.1%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 60.0 4.99e-01 100.0% 66.7%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 58.0 4.83e-01 100.0% 75.4%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 44.0 3.73e-01 71.9% 92.6%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 54.0 5.14e-01 98.4% 91.0%
4tquS02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 47.0 4.71e-01 98.4% 82.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.34e-01 78.1% 68.1%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 37.0 3.60e-01 92.2% 53.4%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 53.0 4.78e-01 100.0% 89.9%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 51.0 4.42e-01 100.0% 77.1%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 47.0 3.83e-01 92.2% 77.3%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 52.0 4.83e-01 100.0% 86.6%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 51.0 4.09e-01 100.0% 59.3%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 49.0 4.46e-01 100.0% 83.3%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.59 37.0 3.17e-01 84.4% 38.0%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 49.0 4.04e-01 100.0% 79.5%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.58 46.0 3.65e-01 89.1% 49.3%
6p1hB02 2.40.50.430 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 49.0 3.89e-01 100.0% 76.1%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 50.0 5.05e-01 100.0% 98.4%
1stzA03 3.30.390.60 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 0.55 47.0 4.24e-01 95.3% 100.0%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.31e-01 73.4% 76.8%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 3.42e-01 100.0% 42.5%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 30.0 3.40e-01 98.4% 72.9%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.65e-01 100.0% 62.0%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 43.0 4.13e-01 100.0% 94.7%
3uw8A02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.52 37.0 3.01e-01 76.6% 59.7%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.14e-01 100.0% 41.5%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 32.0 3.26e-01 98.4% 63.6%
1am5A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 44.0 3.34e-01 98.4% 99.3%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 36.0 2.85e-01 79.7% 50.6%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4091312 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.76 68.0 6.17e-01 98.4% 83.5%
4058606 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.76 68.0 6.08e-01 100.0% 81.1%
3945427 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.76 68.0 6.19e-01 100.0% 85.9%
4285674 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.74 66.0 5.92e-01 100.0% 82.2%
4046343 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.74 66.0 5.87e-01 100.0% 81.1%
3255870 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.73 65.0 5.50e-01 98.4% 68.6%
4404580 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.73 63.0 5.81e-01 93.8% 86.3%
4048745 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.73 64.0 5.71e-01 98.4% 78.9%
3509752 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.71 48.0 3.01e-01 70.3% 94.1%
4248149 2.1.1.26 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB 0.71 64.0 5.83e-01 100.0% 85.9%
4102465 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 64.0 5.38e-01 98.4% 78.8%
1954221 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.71 61.0 5.88e-01 98.4% 94.7%
3612666 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 61.0 4.88e-01 100.0% 74.6%
3384331 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 60.0 5.50e-01 96.9% 100.0%
4278743 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.69 61.0 5.10e-01 98.4% 78.2%
4959053 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 5.93e-01 100.0% 94.3%
3314558 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.68 60.0 4.66e-01 100.0% 70.1%
4477850 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 60.0 5.17e-01 98.4% 92.0%
4238204 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 60.0 5.13e-01 100.0% 83.8%
3520442 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 60.0 5.10e-01 100.0% 84.8%
4547854 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 59.0 4.96e-01 98.4% 90.0%
3590786 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 59.0 4.96e-01 98.4% 81.8%
4672300 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 59.0 5.00e-01 98.4% 88.6%
4479389 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 60.0 4.89e-01 98.4% 80.9%
3296674 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.67 58.0 4.94e-01 100.0% 80.0%
4099166 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 59.0 4.92e-01 98.4% 83.6%
3970058 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 59.0 5.02e-01 100.0% 83.8%
4552570 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.66 57.0 4.84e-01 98.4% 84.5%
3282699 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.66 56.0 4.68e-01 96.9% 80.0%
4680169 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.66 56.0 4.89e-01 100.0% 71.4%
4141727 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.66 57.0 4.88e-01 98.4% 90.5%
4642580 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 56.0 4.86e-01 100.0% 71.4%
4937075 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 4.91e-01 98.4% 74.3%
4981502 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 56.0 4.92e-01 96.9% 94.7%
3990098 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 56.0 4.76e-01 100.0% 69.1%
5028042 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 4.66e-01 98.4% 71.7%
4528707 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 56.0 4.72e-01 98.4% 81.8%
2502895 2.27.1.0 ↗ beta barrels › OB-fold 0.65 51.0 4.80e-01 96.9% 71.4%
4979493 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 4.64e-01 98.4% 75.8%
4032678 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 55.0 4.85e-01 98.4% 75.0%
4188650 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 55.0 4.74e-01 98.4% 75.2%
4271291 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 53.0 5.15e-01 98.4% 84.3%
4997744 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 56.0 4.63e-01 98.4% 73.9%
4001702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 56.0 4.64e-01 100.0% 81.7%
3959920 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 53.0 4.50e-01 98.4% 79.1%
5053650 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 56.0 4.47e-01 98.4% 74.4%
3276225 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 56.0 4.68e-01 100.0% 73.6%
3387410 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 53.0 4.49e-01 98.4% 81.7%
4308192 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 54.0 4.12e-01 98.4% 60.0%
3791987 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.62 54.0 4.52e-01 100.0% 80.9%
4032340 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 53.0 4.57e-01 100.0% 74.3%
5014333 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 50.0 4.81e-01 100.0% 77.3%
3704854 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 53.0 4.46e-01 98.4% 94.5%
3604100 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 54.0 3.88e-01 100.0% 61.4%
4021623 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 53.0 4.14e-01 100.0% 84.1%
4369732 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 51.0 4.40e-01 100.0% 70.9%
5015046 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 52.0 4.77e-01 98.4% 96.5%
381 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.60 52.0 4.91e-01 100.0% 91.0%
3209694 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 43.0 3.69e-01 75.0% 59.0%
3514126 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.59 51.0 4.02e-01 98.4% 85.0%
4193351 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 50.0 4.26e-01 98.4% 80.9%
4107771 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 49.0 4.08e-01 96.9% 73.3%
3602923 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 50.0 4.38e-01 98.4% 72.0%
3518153 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.58 41.0 3.45e-01 73.4% 64.5%
4490344 2.1.1.271 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26390 0.58 48.0 4.25e-01 100.0% 76.2%
3969368 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 49.0 4.21e-01 98.4% 79.1%
4182108 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 50.0 4.21e-01 100.0% 81.7%
4250120 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 49.0 4.16e-01 100.0% 66.1%
3438472 219.1.1.23 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.57 43.0 3.12e-01 87.5% 53.3%
3931552 2.1.1.92 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_D_N 0.57 49.0 3.89e-01 100.0% 66.4%
3939988 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 38.0 3.08e-01 71.9% 35.2%
4309540 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.56 48.0 4.20e-01 100.0% 70.5%
4390251 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.55 43.0 4.47e-01 96.9% 98.3%
3702659 2.1.1.92 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_D_N 0.54 45.0 3.72e-01 100.0% 55.6%
3593837 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 45.0 3.75e-01 100.0% 58.4%
3907024 260.1.1.1 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.54 46.0 2.96e-01 98.4% 25.6%
3511418 2.1.1.38 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNB 0.53 42.0 4.17e-01 100.0% 85.7%
5043255 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 4.05e-01 100.0% 83.7%
4147906 325.1.7.29 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Mad3_BUB1_II 0.51 36.0 3.40e-01 76.6% 85.0%