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OQ834936.1__WKB10150.1__Henu12_gp57__00057

Bact-Vir

OQ834936.1__WKB10150.1__Henu12_gp57__00057

Identity

Accession:
OQ834936 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Shigella_phage_Henu12

TaxID: 3056218

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-76
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fdwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.72 51.0 4.09e-01 74.6% 95.4%
2enpA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.68 47.0 3.71e-01 73.1% 86.4%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.68 59.0 5.19e-01 100.0% 70.9%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 50.0 2.99e-01 77.6% 95.7%
6btdA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.66 46.0 3.31e-01 74.6% 79.3%
1y4uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.65 56.0 4.11e-01 100.0% 80.9%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 44.0 3.95e-01 82.1% 51.1%
2fbeA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.64 57.0 4.06e-01 97.0% 47.3%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.64 41.0 3.46e-01 76.1% 39.4%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 44.0 3.44e-01 73.1% 46.2%
7qs4A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.62 55.0 3.99e-01 97.0% 72.1%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 51.0 3.45e-01 98.5% 27.5%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 53.0 4.91e-01 98.5% 91.8%
2vjwA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 41.0 3.33e-01 71.6% 60.9%
2wl1A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.60 54.0 3.87e-01 100.0% 45.0%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 43.0 3.52e-01 79.1% 100.0%
3er9B03 3.30.460.60 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Poxvirus poly(A) polymerase, nucleotidyltransferase domain 0.60 51.0 4.14e-01 98.5% 59.4%
3k2nA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 41.0 3.06e-01 71.6% 57.6%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.52e-01 82.1% 61.3%
1imvA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 41.0 3.03e-01 73.1% 91.1%
4bkwA03 3.30.500.40 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.59 50.0 4.16e-01 100.0% 61.1%
2vzwB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 46.0 3.61e-01 88.1% 98.7%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.69e-01 88.1% 82.0%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 4.49e-01 98.5% 83.3%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 32.0 2.37e-01 71.6% 20.8%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 39.0 3.22e-01 73.1% 36.1%
3ai4A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 50.0 3.43e-01 100.0% 75.8%
1u2kA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.57 46.0 3.74e-01 88.1% 60.2%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.67e-01 77.6% 28.4%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.57 43.0 3.25e-01 80.6% 98.1%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 39.0 3.37e-01 71.6% 90.9%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.57 49.0 3.38e-01 100.0% 81.6%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 3.83e-01 98.5% 65.0%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 36.0 3.82e-01 88.1% 77.6%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.19e-01 95.5% 93.5%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 2.92e-01 89.6% 56.7%
1d8hA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.55 50.0 3.23e-01 100.0% 52.1%
1mkmA03 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 38.0 2.91e-01 74.6% 98.8%
3stoA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 39.0 3.06e-01 76.1% 66.4%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.65e-01 94.0% 55.6%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 48.0 3.68e-01 97.0% 79.2%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 3.08e-01 94.0% 98.1%
3k6oA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.54 42.0 4.12e-01 85.1% 95.9%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.54 44.0 3.89e-01 100.0% 97.3%
2k31A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 39.0 3.11e-01 79.1% 100.0%
3bdlA02 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 42.0 3.28e-01 88.1% 54.5%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 36.0 3.02e-01 71.6% 35.8%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 3.02e-01 77.6% 36.0%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.78e-01 92.5% 88.5%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.76e-01 91.0% 88.5%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.53 37.0 3.54e-01 74.6% 94.9%
2w7vA00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.53 36.0 3.45e-01 73.1% 89.0%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.88e-01 97.0% 96.7%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.80e-01 95.5% 97.1%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.50e-01 71.6% 73.2%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 46.0 2.92e-01 98.5% 91.6%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.51 43.0 3.81e-01 92.5% 95.9%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.51e-01 94.0% 65.8%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.24e-01 79.1% 89.6%
1sp8C01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 41.0 3.15e-01 94.0% 86.9%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 35.0 3.15e-01 73.1% 52.0%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.59e-01 97.0% 86.0%
2qkxA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 41.0 2.85e-01 91.0% 82.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3850704 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.76 53.0 3.38e-01 73.1% 79.0%
4957895 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.76 53.0 3.35e-01 73.1% 92.0%
3258053 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.74 55.0 3.36e-01 79.1% 85.5%
3657779 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.74 51.0 3.10e-01 71.6% 77.6%
3388100 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.73 65.0 3.97e-01 100.0% 27.2%
4383522 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.73 65.0 3.92e-01 100.0% 27.0%
5018123 5.1.4.64 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YNCE 0.71 54.0 3.32e-01 80.6% 78.7%
3989004 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.71 63.0 4.06e-01 100.0% 34.5%
4001894 207.1.1.24 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.70 45.0 2.54e-01 71.6% 5.6%
3588565 6048.1.1.1 ↗ a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.68 60.0 5.50e-01 98.5% 80.7%
3413352 4996.1.1.3 ↗ alpha arrays › DNA-binding domain of EIN3-like › DNA-binding domain of EIN3-like › DNA-binding domain of EIN3-like › Nrf1_DNA-bind 0.68 50.0 3.99e-01 77.6% 100.0%
3383283 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.64 44.0 4.51e-01 92.5% 75.4%
5018098 2.14.1.6 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › DUF3006 0.63 42.0 4.12e-01 88.1% 62.7%
4983767 218.4.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain 0.63 48.0 4.46e-01 95.5% 63.3%
4991489 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 46.0 4.58e-01 80.6% 85.7%
1082804 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.61 51.0 4.13e-01 98.5% 56.2%
3856444 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.61 55.0 3.81e-01 98.5% 40.5%
4367085 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 44.0 4.10e-01 77.6% 63.5%
3709381 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 51.0 3.09e-01 91.0% 15.7%
3805018 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 48.0 3.09e-01 89.6% 100.0%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.60 45.0 4.64e-01 80.6% 89.1%
3993185 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 2.79e-01 77.6% 92.3%
3719897 227.1.1.18 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.59 48.0 4.02e-01 98.5% 50.4%
4291364 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.59 44.0 3.45e-01 82.1% 93.5%
3327098 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.59 39.0 2.58e-01 77.6% 14.7%
223843 3629.1.1.1 ↗ beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Phage_sheath_domII 0.58 48.0 4.51e-01 98.5% 84.3%
3928754 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 41.0 2.73e-01 76.1% 97.4%
3482223 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 44.0 2.69e-01 83.6% 17.9%
3800122 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.57 42.0 3.21e-01 80.6% 35.7%
3721847 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.57 44.0 2.57e-01 85.1% 90.5%
4018598 2.1.1.219 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 0.57 41.0 3.96e-01 79.1% 78.8%
4028595 59.1.4.1 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.57 41.0 3.18e-01 77.6% 50.3%
3382432 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 46.0 2.92e-01 88.1% 95.8%
4026268 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.56 43.0 3.24e-01 83.6% 51.8%
3392076 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.56 42.0 3.26e-01 83.6% 52.1%
3642215 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.56 43.0 3.25e-01 83.6% 43.0%
4399208 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.56 40.0 3.83e-01 94.0% 65.0%
3485853 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.56 41.0 3.09e-01 80.6% 45.6%
3743204 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.56 42.0 3.31e-01 83.6% 49.7%
3476563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.79e-01 92.5% 80.0%
5017944 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.95e-01 91.0% 83.8%
4390945 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.55 42.0 2.92e-01 86.6% 74.1%
4285702 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 36.0 3.23e-01 70.1% 70.5%
4889459 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.71e-01 98.5% 60.6%
4944367 2.1.1.360 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA 0.54 39.0 3.74e-01 98.5% 66.3%
3277340 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.53 41.0 3.15e-01 83.6% 50.6%
4019390 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.83e-01 95.5% 90.2%
4177859 2.1.1.84 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.53 37.0 3.80e-01 97.0% 78.5%
5009289 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.53 47.0 3.77e-01 98.5% 82.0%
3934636 5.1.5.102 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › OLF 0.52 42.0 2.82e-01 86.6% 92.1%
3540021 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.52 38.0 2.78e-01 79.1% 74.9%
4631771 7516.1.1.24 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 0.51 41.0 2.85e-01 89.6% 76.3%
3799341 3297.1.1.25 ↗ extended segments › Helical hairpin in Ndc80 › Helical hairpin in Ndc80 › Helical hairpin in Ndc80 › WD40_RFWD3 0.51 45.0 2.85e-01 100.0% 80.8%
4193132 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.51 35.0 3.16e-01 74.6% 52.0%
D2 high residues 78-163
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.67 34.0 4.03e-01 97.7% 70.7%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.63 50.0 4.51e-01 86.0% 89.1%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.62 54.0 5.12e-01 100.0% 87.4%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 48.0 4.39e-01 86.0% 63.7%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 50.0 4.41e-01 89.5% 65.1%
4bkwA03 3.30.500.40 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.59 51.0 4.58e-01 100.0% 74.6%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 50.0 3.53e-01 95.3% 66.9%
1ajoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 3.27e-01 79.1% 79.7%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 44.0 4.14e-01 83.7% 96.3%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 45.0 4.02e-01 89.5% 64.8%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 48.0 3.75e-01 96.5% 72.0%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 36.0 3.94e-01 80.2% 83.6%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 47.0 3.36e-01 100.0% 74.2%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 41.0 3.17e-01 79.1% 88.7%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 4.25e-01 73.3% 98.6%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 48.0 3.47e-01 97.7% 75.7%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 45.0 3.29e-01 95.3% 66.7%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 48.0 3.66e-01 100.0% 64.3%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 37.0 3.95e-01 80.2% 84.5%
4csbA00 2.40.128.480 Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein 0.54 44.0 4.12e-01 100.0% 70.8%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 48.0 3.61e-01 100.0% 71.4%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 47.0 3.48e-01 100.0% 77.2%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.64e-01 87.2% 77.3%
5tdeA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 43.0 3.64e-01 91.9% 73.8%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 30.0 2.44e-01 86.0% 25.5%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.51 35.0 2.31e-01 72.1% 68.7%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 41.0 3.68e-01 96.5% 62.7%
6hxiA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.50 42.0 3.26e-01 93.0% 83.9%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.50 31.0 3.44e-01 98.8% 81.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4195041 4090.1.1.1 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like 0.64 49.0 4.14e-01 83.7% 67.3%
135631 4090.1.1.1 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like 0.63 50.0 4.05e-01 86.0% 63.6%
2994234 4090.1.1.1 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like 0.63 49.0 4.05e-01 86.0% 65.2%
5030534 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 39.0 4.11e-01 84.9% 70.7%
3722115 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.62 51.0 4.25e-01 89.5% 68.7%
4960618 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 40.0 3.45e-01 82.6% 43.1%
3250994 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 37.0 4.17e-01 97.7% 80.0%
3588565 6048.1.1.1 ↗ a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 0.61 49.0 4.87e-01 90.7% 87.5%
1178584 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.60 49.0 4.09e-01 87.2% 62.3%
4030967 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 42.0 3.89e-01 83.7% 57.5%
3974495 3680.1.1.2 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › DUF6348 0.59 51.0 4.76e-01 100.0% 86.4%
3934036 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.59 47.0 4.21e-01 87.2% 64.2%
4027847 206.1.3.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.59 41.0 3.02e-01 72.1% 87.7%
3387114 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 41.0 3.98e-01 93.0% 67.4%
1082804 227.1.1.13 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.57 46.0 3.98e-01 93.0% 63.7%
4057937 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.56 45.0 4.01e-01 91.9% 67.9%
4995318 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 38.0 3.45e-01 80.2% 51.3%
4006143 3943.1.1.5 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › WZC_N 0.56 49.0 4.82e-01 98.8% 100.0%
4934002 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.56 44.0 3.92e-01 91.9% 59.2%
71028 227.1.1.5 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_UL42 0.55 45.0 4.02e-01 93.0% 67.9%
4208811 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.55 33.0 3.38e-01 97.7% 58.8%
3062826 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.55 48.0 3.58e-01 100.0% 67.7%
3596476 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.54 45.0 3.84e-01 91.9% 70.6%
3624708 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.54 43.0 3.83e-01 91.9% 62.2%
3285086 3268.1.1.0 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.51 35.0 3.71e-01 100.0% 81.3%
3594510 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.51 43.0 3.38e-01 100.0% 97.6%
3591493 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.50 43.0 3.71e-01 100.0% 94.5%
4566369 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.50 33.0 3.12e-01 82.6% 53.6%
3477558 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.50 40.0 3.25e-01 91.9% 97.8%