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OQ846916.1__WJJ55254.1__QB910_000010__00010
Bact-VirOQ846916.1__WJJ55254.1__QB910_000010__00010
Identity
- Accession:
- OQ846916 ↗
- Kingdom:
- phage
Quality
64.3
mean pLDDT
Taxonomy
TaxID: 3428177
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-91
D2
high
residues 170-215
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 42.0 | 2.91e-01 | 97.8% | 18.0% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 39.0 | 2.66e-01 | 100.0% | 16.2% |
| 3ikwA02 | 3.10.540.20 | Alpha Beta › Roll › duf1285 like fold › | 0.62 | 50.0 | 4.39e-01 | 89.1% | 81.4% |
| 3gw6A03 | 3.30.2460.10 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain | 0.60 | 36.0 | 3.40e-01 | 97.8% | 43.9% |
| 1w2wB00 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.59 | 50.0 | 3.39e-01 | 100.0% | 47.1% |
| 4qszA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 44.0 | 2.73e-01 | 84.8% | 16.4% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.54 | 34.0 | 2.57e-01 | 100.0% | 22.2% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 2.95e-01 | 82.6% | 51.6% |
| 3sk2A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 34.0 | 2.59e-01 | 71.7% | 97.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3737341 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.73 | 46.0 | 3.35e-01 | 100.0% | 23.1% |
| 3541318 | 3246.1.1.2 ↗ | few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM17_MPD | 0.72 | 49.0 | 4.38e-01 | 71.7% | 72.3% |
| 5036216 | 304.51.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs | 0.69 | 47.0 | 3.08e-01 | 87.0% | 15.5% |
| 3662024 | 304.30.1.1 ↗ | a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A | 0.67 | 48.0 | 3.95e-01 | 78.3% | 42.2% |
| 3486348 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.66 | 42.0 | 3.76e-01 | 89.1% | 44.6% |
| 3726495 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.65 | 46.0 | 2.75e-01 | 89.1% | 10.8% |
| 3719123 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.60 | 51.0 | 3.05e-01 | 100.0% | 30.6% |
| 3178492 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.59 | 43.0 | 2.69e-01 | 80.4% | 16.7% |
| 3265113 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.58 | 43.0 | 2.72e-01 | 84.8% | 70.6% |
| 1565132 | 10.12.1.52 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 | 0.58 | 44.0 | 2.73e-01 | 87.0% | 75.5% |
| 3968999 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.57 | 38.0 | 2.23e-01 | 100.0% | 7.0% |
| 4965661 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.55 | 43.0 | 3.68e-01 | 97.8% | 50.6% |
| 3421099 | 225.1.1.2 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HSP90,HATPase_c_3 | 0.54 | 44.0 | 2.81e-01 | 95.7% | 69.8% |
| 3563069 | 1086.1.1.5 ↗ | beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › EMI | 0.54 | 43.0 | 4.33e-01 | 89.1% | 91.1% |
| 4241362 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.53 | 36.0 | 2.29e-01 | 71.7% | 66.4% |
| 4930176 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.53 | 45.0 | 2.82e-01 | 100.0% | 26.9% |
| 3641345 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 37.0 | 3.29e-01 | 80.4% | 48.8% |
| 3942393 | 2004.1.1.173 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TrwB_AAD_bind | 0.51 | 43.0 | 2.55e-01 | 100.0% | 11.7% |
| 3387999 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.51 | 42.0 | 2.70e-01 | 93.5% | 19.5% |
| 3947849 | 3609.1.1.4 ↗ | alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN | 0.51 | 35.0 | 3.10e-01 | 100.0% | 42.7% |
| 4017204 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.50 | 36.0 | 2.90e-01 | 87.0% | 35.0% |
| 3929060 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.50 | 34.0 | 2.81e-01 | 76.1% | 34.7% |
D3
high
residues 227-294
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2sliA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 54.0 | 3.93e-01 | 94.1% | 50.0% |
| 7qs4A01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.64 | 56.0 | 4.13e-01 | 97.1% | 52.5% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 36.0 | 4.18e-01 | 75.0% | 90.5% |
| 5c33A00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.62 | 53.0 | 3.98e-01 | 98.5% | 56.1% |
| 2vz8A04 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.61 | 54.0 | 3.65e-01 | 100.0% | 78.7% |
| 2jjqA03 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 50.0 | 4.04e-01 | 98.5% | 66.9% |
| 1qxmA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 51.0 | 3.99e-01 | 100.0% | 67.6% |
| 2vseA04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 50.0 | 3.97e-01 | 100.0% | 67.1% |
| 6obtA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.57 | 50.0 | 3.37e-01 | 100.0% | 29.5% |
| 3kfvA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 41.0 | 3.66e-01 | 100.0% | 53.0% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 35.0 | 2.25e-01 | 100.0% | 12.4% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 44.0 | 3.08e-01 | 89.7% | 71.0% |
| 2gumB01 | 2.30.30.1230 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 3.32e-01 | 94.1% | 48.0% |
| 4fwwA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 44.0 | 2.73e-01 | 92.6% | 36.0% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 38.0 | 3.46e-01 | 83.8% | 54.3% |
| 2x8nA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.54 | 45.0 | 4.13e-01 | 100.0% | 71.1% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 44.0 | 2.72e-01 | 88.2% | 87.8% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 3.38e-01 | 100.0% | 57.8% |
| 3d4iB01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.53 | 42.0 | 2.89e-01 | 88.2% | 99.6% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.52 | 43.0 | 3.04e-01 | 95.6% | 45.5% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 40.0 | 4.07e-01 | 100.0% | 86.4% |
| 5exvC00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.52 | 44.0 | 3.44e-01 | 100.0% | 70.9% |
| 7rpyA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 3.94e-01 | 98.5% | 67.0% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 43.0 | 3.34e-01 | 100.0% | 75.6% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 43.0 | 2.79e-01 | 97.1% | 76.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4169121 | 2.8.1.0 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C | 0.88 | 63.0 | 6.96e-01 | 94.1% | 92.7% |
| 5049784 | 2.4.1.18 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › Mu-transpos_C_2 | 0.82 | 60.0 | 6.55e-01 | 97.1% | 94.5% |
| 4517280 | 2.8.1.2 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 | 0.80 | 61.0 | 6.07e-01 | 100.0% | 78.6% |
| 5018569 | 2.8.1.2 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 | 0.79 | 60.0 | 6.53e-01 | 100.0% | 100.0% |
| 3974395 | 2.8.1.0 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C | 0.75 | 56.0 | 5.78e-01 | 100.0% | 84.6% |
| 4495413 | 2.8.1.0 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C | 0.75 | 60.0 | 6.02e-01 | 100.0% | 85.7% |
| 4230177 | 2.8.1.2 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 | 0.68 | 62.0 | 6.22e-01 | 100.0% | 97.1% |
| 3963647 | 2.8.1.0 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C | 0.67 | 60.0 | 5.86e-01 | 100.0% | 94.7% |
| 4542224 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.67 | 55.0 | 3.47e-01 | 92.6% | 33.5% |
| None | — | 0.67 | 56.0 | 3.57e-01 | 94.1% | 37.5% | |
| 3846830 | 10.1.1.8 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY | 0.65 | 58.0 | 4.15e-01 | 97.1% | 48.7% |
| 3525010 | 10.1.1.9 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY | 0.65 | 57.0 | 4.16e-01 | 97.1% | 49.7% |
| 4242917 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.65 | 54.0 | 3.42e-01 | 94.1% | 37.5% |
| 4172308 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.61 | 47.0 | 3.92e-01 | 88.2% | 96.2% |
| 3915890 | 10.1.1.5 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin | 0.60 | 50.0 | 4.33e-01 | 94.1% | 77.3% |
| 3726266 | 3363.1.1.0 ↗ | beta sandwiches › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs | 0.60 | 44.0 | 4.03e-01 | 77.9% | 93.3% |
| 3799710 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.59 | 50.0 | 4.70e-01 | 95.6% | 90.6% |
| 3559931 | 3850.1.1.1 ↗ | few secondary structure elements › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain › Protein-only RNase P Zn-binding domain › PRORP | 0.57 | 40.0 | 3.97e-01 | 75.0% | 93.2% |
| 3390286 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.55 | 49.0 | 4.03e-01 | 100.0% | 73.6% |
| 3635145 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.55 | 41.0 | 2.63e-01 | 82.4% | 33.8% |
| 3806012 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.54 | 44.0 | 2.89e-01 | 94.1% | 70.9% |
| 3587051 | 10.29.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins | 0.54 | 44.0 | 3.44e-01 | 100.0% | 40.0% |
| 4960131 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 46.0 | 3.25e-01 | 100.0% | 40.9% |
| 3176073 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.52 | 34.0 | 3.43e-01 | 76.5% | 65.2% |
| 4377440 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 37.0 | 3.96e-01 | 83.8% | 100.0% |
| 3921608 | 219.1.1.22 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Rad4 | 0.51 | 46.0 | 3.10e-01 | 100.0% | 48.3% |
| 4985707 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.51 | 46.0 | 3.14e-01 | 98.5% | 99.1% |
| 4493460 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.51 | 39.0 | 3.42e-01 | 86.8% | 96.4% |
| 3501574 | 4.1.1.118 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_15 | 0.51 | 41.0 | 4.03e-01 | 100.0% | 82.7% |
| 3258467 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.51 | 38.0 | 3.86e-01 | 85.3% | 84.3% |
| 3556321 | 4.1.1.118 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_15 | 0.50 | 39.0 | 3.80e-01 | 100.0% | 76.2% |