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OQ846916.1__WJJ55319.1__QB910_000075__00075

Bact-Vir

OQ846916.1__WJJ55319.1__QB910_000075__00075

Identity

Accession:
OQ846916 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 483-586_623-673
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 113.6 1.40e-32 67.7% 21.0%
PF02867.21 Ribonuc_red_lgC 25.5 7.30e-06 33.6% 9.2%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.95 92.0 6.20e-01 100.0% 45.4%
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.95 81.0 5.34e-01 87.1% 35.5%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.93 90.0 5.73e-01 100.0% 32.7%
2wghA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.90 87.0 5.50e-01 100.0% 29.8%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.87 72.0 4.85e-01 86.5% 29.5%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 25.0 3.45e-01 72.9% 73.4%
4axsA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.58 52.0 4.22e-01 97.4% 85.6%
2x9qB00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.56 44.0 3.90e-01 98.7% 57.7%
3oqiA00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.55 47.0 4.19e-01 100.0% 64.4%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 47.0 3.64e-01 94.8% 78.1%
3aysA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 45.0 3.44e-01 94.8% 72.0%
4d2dA00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 42.0 2.97e-01 87.7% 45.4%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3500621 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.99 97.0 6.36e-01 100.0% 37.1%
3963206 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.96 94.0 6.14e-01 100.0% 37.1%
4145444 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.96 94.0 6.17e-01 100.0% 38.1%
3942765 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.96 94.0 6.15e-01 100.0% 37.7%
4298539 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.96 93.0 6.09e-01 100.0% 39.6%
5030208 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 93.0 5.88e-01 100.0% 35.9%
4985374 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 92.0 5.96e-01 100.0% 30.8%
4067125 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 93.0 6.12e-01 100.0% 38.0%
3972491 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 92.0 5.94e-01 100.0% 41.7%
3590466 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 92.0 5.99e-01 100.0% 39.4%
4990406 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 92.0 5.89e-01 100.0% 40.7%
3823652 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 91.0 5.89e-01 100.0% 38.9%
4564490 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 90.0 5.87e-01 100.0% 38.2%
4993733 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.93 91.0 5.91e-01 100.0% 32.4%
4015532 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.93 90.0 5.84e-01 100.0% 35.1%
4963031 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 90.0 5.76e-01 100.0% 31.9%
4937370 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 90.0 5.73e-01 100.0% 39.3%
4934525 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 90.0 5.84e-01 100.0% 37.4%
4994375 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.91 89.0 5.92e-01 100.0% 41.0%
5040104 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 89.0 5.88e-01 100.0% 39.8%
996122 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 88.0 5.70e-01 100.0% 35.4%
2504767 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 88.0 5.86e-01 100.0% 40.9%
5058546 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.91 88.0 5.61e-01 100.0% 37.6%
4190659 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 87.0 5.47e-01 100.0% 34.0%
2472944 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.88 85.0 5.84e-01 100.0% 35.6%
4087732 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.86 82.0 5.53e-01 100.0% 40.2%
4208725 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.84 80.0 5.38e-01 99.4% 49.6%
5051775 2500.1.1.9 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › RNR-II_ins_dom 0.83 80.0 5.39e-01 100.0% 35.1%
3275621 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.83 80.0 5.50e-01 100.0% 38.2%
4822330 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.80 77.0 5.25e-01 98.7% 49.8%
4825675 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.78 58.0 4.85e-01 77.4% 50.0%
3731889 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 37.0 3.37e-01 85.8% 57.6%
D2 medium residues 1-103
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03477.22 best ATP-cone 41.6 2.10e-10 83.5% 97.7%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 31.0 4.12e-01 84.5% 73.6%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.67 54.0 4.80e-01 86.4% 100.0%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.64 50.0 4.88e-01 85.4% 100.0%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.64 52.0 5.00e-01 89.3% 98.3%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 48.0 4.68e-01 85.4% 100.0%
4nqwA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 42.0 4.64e-01 70.9% 100.0%
5uiyA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 43.0 4.27e-01 79.6% 96.3%
4j7zF00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.58 37.0 3.88e-01 82.5% 71.3%
2kzcA00 1.10.790.20 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Domain of unknown function DUF1476 0.57 39.0 4.23e-01 83.5% 87.1%
4uyeA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 46.0 4.61e-01 91.3% 97.2%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 39.0 4.43e-01 81.6% 100.0%
3kzqA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 42.0 3.41e-01 82.5% 66.5%
1c1dA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 45.0 3.68e-01 91.3% 86.1%
3bciA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 45.0 3.84e-01 91.3% 70.9%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.53 41.0 3.50e-01 84.5% 100.0%
4b4yA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 41.0 3.70e-01 85.4% 79.2%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.52 41.0 3.75e-01 94.2% 62.4%
1jqkA03 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 42.0 3.53e-01 86.4% 77.1%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.51 36.0 4.01e-01 78.6% 97.4%
1sgmA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 44.0 3.68e-01 98.1% 90.8%
6vvoC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.50 38.0 4.02e-01 94.2% 91.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2791177 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.90 84.0 8.30e-01 97.1% 99.1%
5017312 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.89 66.0 7.43e-01 83.5% 98.8%
3486229 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.88 70.0 7.53e-01 83.5% 98.9%
1853272 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 77.0 7.90e-01 97.1% 96.0%
4954173 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 62.0 7.16e-01 79.6% 100.0%
4257906 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 71.0 7.62e-01 85.4% 100.0%
4961006 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 61.0 7.11e-01 79.6% 100.0%
3594048 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.86 69.0 7.42e-01 84.5% 100.0%
4994194 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 60.0 6.95e-01 78.6% 98.7%
5074671 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.86 67.0 7.35e-01 86.4% 98.8%
1878968 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 78.0 7.94e-01 96.1% 99.0%
4873837 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 57.0 6.19e-01 74.8% 80.5%
4987113 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.85 60.0 6.97e-01 79.6% 100.0%
4952141 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 61.0 6.89e-01 81.6% 96.2%
3784313 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 69.0 7.33e-01 85.4% 100.0%
4948420 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.84 62.0 7.00e-01 96.1% 98.8%
4312875 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.84 73.0 7.61e-01 96.1% 98.9%
4948813 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.84 62.0 6.91e-01 84.5% 97.5%
5058165 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.84 65.0 7.10e-01 85.4% 97.6%
4942297 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.84 56.0 6.65e-01 74.8% 100.0%
4143596 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.83 61.0 6.55e-01 75.7% 98.9%
5057092 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.83 55.0 6.59e-01 74.8% 100.0%
4987957 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.82 58.0 6.66e-01 81.6% 100.0%
5034061 148.1.3.400 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ribonuc_red_lgN 0.82 77.0 6.12e-01 100.0% 60.5%
4989754 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.81 60.0 6.71e-01 81.6% 98.8%
4979817 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.81 58.0 6.49e-01 79.6% 95.0%
4941277 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.81 59.0 6.61e-01 77.7% 97.5%
2320584 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.80 70.0 7.21e-01 100.0% 97.9%
5001059 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.80 59.0 6.53e-01 96.1% 98.8%
4945368 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.80 59.0 6.61e-01 95.1% 100.0%
4588018 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.79 64.0 6.69e-01 84.5% 91.6%
4485359 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.79 63.0 6.57e-01 95.1% 90.5%
4160317 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.79 64.0 6.12e-01 84.5% 75.7%
4466734 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.79 64.0 6.12e-01 84.5% 75.7%
4956905 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.79 58.0 6.46e-01 96.1% 98.8%
5051504 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.78 55.0 6.29e-01 72.8% 98.7%
3989376 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.78 72.0 7.19e-01 100.0% 96.2%
5042563 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.78 61.0 6.59e-01 85.4% 100.0%
4479880 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.77 62.0 6.18e-01 84.5% 82.9%
4056578 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.74 58.0 5.66e-01 81.6% 77.3%
3607359 103.2.1.1 alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN 0.74 61.0 4.69e-01 85.4% 57.1%
3519243 1074.1.1.0 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases 0.73 60.0 4.72e-01 86.4% 59.5%
5043182 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.72 64.0 6.54e-01 96.1% 100.0%
3931889 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.69 49.0 4.79e-01 74.8% 95.7%
3931890 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.68 51.0 4.70e-01 77.7% 83.1%
3533426 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.63 53.0 4.67e-01 91.3% 92.0%
3401392 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.60 48.0 4.45e-01 86.4% 86.9%
3744846 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.59 49.0 4.77e-01 93.2% 100.0%
4448424 101.1.15.3 alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung 0.59 41.0 4.00e-01 82.5% 64.3%
5062595 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.57 46.0 3.46e-01 88.3% 65.8%
3279434 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.55 44.0 3.73e-01 87.4% 57.7%
4954375 601.7.1.20 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Abi_C 0.55 38.0 3.69e-01 84.5% 62.5%
4368947 141.1.1.6 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › HEPPP_synt_1 0.54 48.0 3.62e-01 98.1% 79.2%
3681479 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 43.0 4.13e-01 87.4% 91.7%
D3 medium residues 104-205
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00317.27 best Ribonuc_red_lgN 58.3 9.00e-16 63.7% 77.9%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 41.0 4.40e-01 86.3% 89.4%
2q37A00 1.10.3330.10 Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase 0.57 37.0 3.37e-01 100.0% 47.9%
1wlmA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 37.0 3.76e-01 70.6% 100.0%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 47.0 4.17e-01 99.0% 69.9%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 42.0 4.11e-01 86.3% 99.1%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.50 33.0 3.66e-01 80.4% 84.0%
5u4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 39.0 2.73e-01 84.3% 85.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3515890 1074.1.1.1 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN 0.98 95.0 8.70e-01 100.0% 81.6%
2791176 1074.1.1.1 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN 0.97 94.0 8.67e-01 100.0% 83.1%
4573827 1074.1.1.1 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN 0.97 89.0 8.43e-01 100.0% 83.5%
3966685 1074.1.1.1 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN 0.95 86.0 8.04e-01 100.0% 80.0%
3948801 1074.1.1.1 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN 0.94 90.0 8.31e-01 100.0% 86.4%
4823095 138.1.1.17 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › RAD24_helical 0.57 34.0 3.14e-01 76.5% 44.4%
4986460 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.53 45.0 4.09e-01 100.0% 67.9%
3454448 5073.1.2.7 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › PhoLip_ATPase_C 0.52 45.0 3.45e-01 98.0% 80.8%
3486229 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.51 34.0 3.62e-01 84.3% 77.8%
3672138 611.4.1.0 alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like 0.50 43.0 3.89e-01 98.0% 72.0%
4297406 601.1.2.81 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Serinc 0.50 42.0 3.68e-01 99.0% 60.0%
D4 medium residues 206-339_402-428
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 140.7 8.80e-41 75.8% 23.1%
D5 medium residues 340-401
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 24.0 2.00e-05 100.0% 9.7%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.90 77.0 4.39e-01 100.0% 11.0%
1peqA03 1.10.1650.20 Mainly Alpha › Orthogonal Bundle › 50s Ribosomal Protein L19e, Chain O, domain 1 › 0.80 63.0 6.66e-01 96.8% 100.0%
4pv6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 39.0 3.01e-01 74.2% 57.8%
1s3zA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 37.0 2.90e-01 71.0% 66.7%
2glzA00 3.30.1330.130 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.53 39.0 3.06e-01 82.3% 86.6%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 3.13e-01 75.8% 67.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3500621 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 88.0 4.97e-01 100.0% 11.5%
4067125 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 87.0 4.95e-01 100.0% 12.0%
3963206 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 78.0 4.39e-01 100.0% 10.4%
4145444 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 77.0 4.39e-01 100.0% 10.7%
3942765 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 77.0 4.37e-01 100.0% 10.6%
2504767 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 72.0 4.14e-01 100.0% 10.8%
3590466 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.86 70.0 4.03e-01 100.0% 10.1%
3958480 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.83 68.0 4.12e-01 100.0% 14.9%
3726014 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 36.0 2.48e-01 71.0% 67.9%
3495306 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.51 40.0 2.72e-01 91.9% 90.7%
D6 medium residues 429-482
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 37.0 3.15e-01 85.2% 43.5%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.01e-01 72.2% 85.2%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.50 42.0 2.82e-01 98.1% 94.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3500621 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.96 88.0 4.93e-01 100.0% 10.0%
3328712 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.66 46.0 3.08e-01 75.9% 30.4%
3728343 4186.1.1.0 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p 0.58 46.0 3.51e-01 94.4% 69.0%
None 0.54 47.0 2.52e-01 94.4% 7.0%
3738677 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.54 44.0 3.49e-01 94.4% 55.9%
4085638 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.52 44.0 3.55e-01 94.4% 62.5%
4222482 385.1.1.0 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines 0.52 40.0 3.49e-01 88.9% 78.9%
4061385 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.52 43.0 3.52e-01 94.4% 61.9%
4484391 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.52 37.0 2.77e-01 74.1% 80.8%
4120121 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.51 36.0 2.85e-01 74.1% 91.8%
4088621 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 43.0 3.46e-01 94.4% 61.0%
3239454 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 41.0 3.14e-01 98.1% 78.0%
4227163 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 42.0 3.48e-01 94.4% 63.0%
1125236 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 41.0 3.35e-01 94.4% 60.6%
4124823 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 42.0 3.42e-01 94.4% 61.9%
4493293 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 42.0 3.36e-01 94.4% 60.0%
4493480 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.50 41.0 3.41e-01 94.4% 61.5%
4324097 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.50 42.0 3.45e-01 94.4% 60.0%
4575287 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.50 41.0 3.32e-01 94.4% 56.6%
4600281 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.50 42.0 3.37e-01 94.4% 57.8%
4313846 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.50 41.0 3.39e-01 94.4% 61.5%
3292891 2003.1.5.121 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 0.50 33.0 2.20e-01 72.2% 17.1%
D7 medium residues 674-752
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 63.3 2.50e-17 79.8% 11.8%