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WLW38135.1

Arc-Vir

OQ850970__WLW38135.1__X__00024

Identity

Accession:
OQ850970 ↗
Protein ID:
WLW38135.1 ↗
Kingdom:
archaea

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-84
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dckA00 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.77 61.0 5.73e-01 86.2% 74.6%
1ng6A02 1.10.10.410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 58.0 5.91e-01 98.3% 87.7%
3bk2A03 3.10.20.580 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.75 64.0 5.32e-01 100.0% 55.6%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.72 63.0 5.47e-01 100.0% 73.0%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.71 63.0 5.29e-01 100.0% 90.0%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 60.0 5.31e-01 100.0% 74.7%
3rnrB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.69 61.0 4.14e-01 100.0% 35.1%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.68 59.0 4.90e-01 100.0% 64.8%
5ojcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 59.0 4.38e-01 100.0% 83.8%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 59.0 4.23e-01 100.0% 43.7%
2aajA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.67 59.0 4.57e-01 100.0% 72.9%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.67 55.0 4.70e-01 94.8% 60.6%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 55.0 5.00e-01 93.1% 83.5%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 54.0 4.89e-01 94.8% 71.1%
1mwwB00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.66 57.0 4.59e-01 100.0% 77.1%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 53.0 4.95e-01 94.8% 82.2%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 55.0 4.24e-01 100.0% 90.0%
6nplA01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.64 53.0 3.20e-01 96.6% 81.2%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 53.0 4.91e-01 96.6% 82.1%
1kkhA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.63 54.0 3.80e-01 94.8% 49.2%
2jfrA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.63 54.0 3.64e-01 100.0% 56.0%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.63 53.0 3.67e-01 100.0% 67.3%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 53.0 4.07e-01 100.0% 86.9%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.62 45.0 3.24e-01 77.6% 65.5%
5n1qB02 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 52.0 3.99e-01 100.0% 70.7%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.62 54.0 4.06e-01 100.0% 55.2%
2j4jF00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.61 52.0 3.57e-01 100.0% 76.5%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.60 41.0 4.38e-01 79.3% 80.4%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 47.0 3.80e-01 100.0% 87.1%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 48.0 4.15e-01 93.1% 60.8%
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 49.0 3.53e-01 98.3% 31.2%
3gagA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 49.0 3.45e-01 100.0% 73.3%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 47.0 3.66e-01 94.8% 41.4%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 47.0 4.07e-01 93.1% 64.6%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.58 45.0 4.50e-01 98.3% 88.7%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.57 41.0 4.08e-01 100.0% 74.6%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.57 43.0 3.55e-01 79.3% 70.3%
2aamC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 47.0 3.08e-01 94.8% 54.5%
8gf5C01 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 3.69e-01 100.0% 74.6%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.57 47.0 4.30e-01 91.4% 83.3%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 47.0 4.52e-01 100.0% 95.8%
3l6aA01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 48.0 3.43e-01 100.0% 30.5%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 47.0 3.64e-01 100.0% 44.8%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.56 44.0 3.67e-01 100.0% 52.7%
4b94A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 44.0 3.47e-01 93.1% 44.0%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 42.0 4.18e-01 93.1% 82.0%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.54 42.0 4.30e-01 93.1% 96.5%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.54 46.0 3.39e-01 94.8% 97.4%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 37.0 3.43e-01 72.4% 59.5%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.53 38.0 3.57e-01 79.3% 60.0%
6ll8A01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.53 44.0 3.13e-01 93.1% 30.1%
4exjA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 43.0 3.39e-01 89.7% 64.5%
5wbwA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.51 42.0 3.11e-01 93.1% 72.6%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 36.0 2.51e-01 75.9% 51.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4132742 7549.1.1.1 a/b three-layered sandwiches › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine_A 0.79 56.0 3.50e-01 75.9% 15.3%
5079588 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.78 69.0 5.94e-01 98.3% 82.2%
5082325 3705.1.1.3 alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.77 68.0 6.42e-01 98.3% 87.1%
4964413 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.77 71.0 4.58e-01 100.0% 25.5%
3925909 371.1.1.0 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.77 66.0 5.60e-01 100.0% 66.0%
5029931 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 5.95e-01 100.0% 94.3%
4217211 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.72 64.0 3.80e-01 100.0% 15.7%
3282674 371.1.1.3 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_3 0.72 61.0 5.23e-01 100.0% 74.0%
4512923 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.71 62.0 5.46e-01 98.3% 70.6%
3603904 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.71 58.0 5.09e-01 93.1% 72.2%
3958294 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.71 61.0 5.36e-01 100.0% 70.0%
3988991 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.70 60.0 5.24e-01 98.3% 76.7%
5053895 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.70 56.0 5.01e-01 91.4% 74.1%
3752445 102.1.1.143 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › XTBD 0.69 45.0 4.33e-01 70.7% 57.4%
4975746 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.68 57.0 5.69e-01 94.8% 100.0%
4090711 5067.1.1.8 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › HPP 0.68 59.0 4.33e-01 98.3% 38.1%
3400463 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 58.0 4.98e-01 98.3% 70.5%
4934293 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.67 55.0 5.04e-01 100.0% 70.0%
4028766 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.67 54.0 4.76e-01 93.1% 72.2%
3946046 101.1.2.52 alpha arrays › HTH › HTH › winged helix domain › KicB 0.67 55.0 5.16e-01 96.6% 77.3%
3277746 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.67 56.0 3.83e-01 100.0% 40.6%
3436690 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.66 57.0 5.00e-01 100.0% 70.0%
3966335 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.66 56.0 3.83e-01 100.0% 41.3%
3457692 3419.1.1.0 alpha bundles › Antitoxin VbhA › Antitoxin VbhA › Antitoxin VbhA 0.65 43.0 4.57e-01 81.0% 80.0%
5053399 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 50.0 4.47e-01 84.5% 58.8%
3513473 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 52.0 3.97e-01 93.1% 38.0%
3646179 4030.1.1.20 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Ovate 0.64 50.0 5.14e-01 98.3% 100.0%
3226082 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.64 51.0 4.17e-01 89.7% 48.2%
4189329 6026.1.1.36 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › AlaE 0.63 54.0 4.18e-01 96.6% 60.8%
143693 210.2.1.3 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.63 51.0 3.66e-01 100.0% 60.7%
4969273 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.62 49.0 4.17e-01 87.9% 53.1%
4995769 102.1.2.10 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage 0.62 52.0 3.39e-01 100.0% 21.0%
3711857 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.62 46.0 3.99e-01 86.2% 49.5%
3716548 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.62 48.0 4.03e-01 87.9% 49.5%
4996071 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 49.0 4.30e-01 89.7% 60.0%
4944102 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.61 49.0 4.28e-01 89.7% 60.0%
3959950 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.60 51.0 3.61e-01 100.0% 54.0%
4273757 148.1.3.257 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF494 0.60 50.0 4.32e-01 93.1% 94.4%
3476361 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.59 51.0 4.04e-01 96.6% 51.7%
3592778 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 48.0 4.30e-01 93.1% 64.7%
5055142 2006.1.2.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.59 49.0 3.41e-01 93.1% 75.5%
3829818 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 47.0 3.87e-01 100.0% 45.8%
4000036 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.58 50.0 3.89e-01 100.0% 47.4%
4967186 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.57 50.0 3.35e-01 100.0% 30.8%
3600676 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.57 47.0 3.90e-01 93.1% 53.6%
2075033 3787.1.1.0 alpha bundles › HAD superfamily helical bundle insertion domain 0.57 46.0 4.31e-01 98.3% 83.5%
3627307 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 46.0 3.44e-01 100.0% 47.2%
4952995 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.56 47.0 3.41e-01 100.0% 44.2%
None 0.55 43.0 2.71e-01 89.7% 28.9%
5079684 2006.1.2.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.55 46.0 3.20e-01 94.8% 27.3%
4946806 7544.1.1.2 a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › PYNP_C 0.54 42.0 2.92e-01 96.6% 21.6%
4948515 2006.1.2.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.54 46.0 3.19e-01 93.1% 28.9%
3297096 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.53 44.0 3.25e-01 100.0% 42.8%
3661171 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 45.0 2.62e-01 100.0% 15.5%
5018508 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 3.81e-01 100.0% 63.2%